update to 6.1.3

.gitignore

@@ -12,3 +12,4 @@
 /torque-4.2.6.1.tar.gz
 /torque-4.2.8.tar.gz
 /torque-4.2.10.tar.gz
+/torque-6.1.3.tar.xz

sources

@@ -1,2 +1 @@
-3dd4348f54ba236ee7c208cc6b97f674  torque-4.2.8.tar.gz
+SHA512 (torque-6.1.3.tar.xz) = 9cace317a6331c8a043a11115161cd9a852623ce0ccbc6d745fcc16963a8fe63ed8e4c2d0922a9bd950a2aa6273246340ea32488c88d2e9e476067c3429f1b85
-541f58ab46166e86d7a468500be3fa4d  torque-4.2.10.tar.gz

torque-6.1.3-bool-fix.patch

@@ -0,0 +1,33 @@
+diff -up torque/src/drmaa/src/compat.h.bool-fix torque/src/drmaa/src/compat.h
+--- torque/src/drmaa/src/compat.h.bool-fix	2021-01-28 17:59:06.149190046 -0500
++++ torque/src/drmaa/src/compat.h	2021-01-28 17:59:16.941243507 -0500
+@@ -51,6 +51,7 @@ int asprintf(char **strp, const char *fm
+ int vasprintf(char **strp, const char *fmt, va_list ap);
+ #endif
+ 
++/*
+ #ifndef HAVE_STDBOOL_H
+ # ifndef bool
+ #  define bool int
+@@ -62,6 +63,7 @@ int vasprintf(char **strp, const char *f
+ #  define false 0
+ # endif
+ #endif
++*/
+ 
+ #ifdef __cplusplus
+ }
+diff -up torque/src/include/pbs_ifl.h.bool-fix torque/src/include/pbs_ifl.h
+--- torque/src/include/pbs_ifl.h.bool-fix	2021-01-28 16:14:24.000000000 -0500
++++ torque/src/include/pbs_ifl.h	2021-01-28 17:50:17.068569045 -0500
+@@ -87,6 +87,10 @@
+ #define _PBS_IFL_DEF
+ #include <sys/socket.h>
+ 
++#ifdef __cplusplus
++#include <stdbool.h>
++#endif /* __cplusplus */
++
+ /* Attribute Names used by user commands */
+ 
+ #define ATTR_a "Execution_Time"

torque-6.1.3-port-args.patch

@@ -0,0 +1,46 @@
+diff -up torque/contrib/init.d/pbs_mom.in.port-args torque/contrib/init.d/pbs_mom.in
+--- torque/contrib/init.d/pbs_mom.in.port-args	2021-01-28 16:29:53.554947436 -0500
++++ torque/contrib/init.d/pbs_mom.in	2021-01-28 16:33:43.410074859 -0500
+@@ -25,6 +25,8 @@ SBIN_PATH=@sbindir@
+ PBS_DAEMON="$SBIN_PATH/pbs_mom"
+ PBS_HOME=@PBS_HOME@
+ PBS_ARGS=""
++# this should be the integer port value
++PBS_PORT=""
+ 
+ SUBSYS_LOCK="/var/lock/subsys/pbs_mom"
+ 
+@@ -32,6 +34,14 @@ if [ -f /etc/sysconfig/pbs_mom ];then
+ 	. /etc/sysconfig/pbs_mom
+ fi
+ 
++if [ -z "$PBS_PORT" ]; then
++   momctl_port_arg=""
++   pbs_mom_port_arg=""
++else
++   momctl_port_arg="$PBS_PORT"
++   pbs_mom_port_arg="-M $PBS_PORT"
++fi
++
+ MOM_LOCK="$PBS_HOME/mom_priv/mom.lock"
+ 
+ if [ -z "$previous" ];then
+@@ -84,7 +94,7 @@ kill_pbs_mom() {
+ 	retval=1
+ 	for i in {1..5}; do
+ 		kill -0 $pid &>/dev/null || return 0
+-		$SBIN_PATH/momctl -s && return $?
++		$SBIN_PATH/momctl -s $momctl_port_arg && return $?
+ 		sleep 1
+ 	done
+ 	return $retval
+@@ -110,7 +120,7 @@ case "$1" in
+ 		fi
+ 
+ 		# ulimit -c unlimited  # Uncomment this to preserve core files
+-		daemon $PBS_DAEMON $args -d $PBS_HOME $PBS_ARGS
++		daemon $PBS_DAEMON $args $pbs_mom_port_arg -d $PBS_HOME $PBS_ARGS
+ 		RET=$?
+ 		touch $SUBSYS_LOCK
+ 		echo
+diff -up torque/contrib/init.d/pbs_sched.in.port-args torque/contrib/init.d/pbs_sched.in

torque-6.1.3-system-jsoncpp.patch

@@ -0,0 +1,318 @@
+diff -up torque/configure.ac.system-jsoncpp torque/configure.ac
+--- torque/configure.ac.system-jsoncpp	2021-01-28 17:33:44.008649547 -0500
++++ torque/configure.ac	2021-01-28 17:37:26.446751483 -0500
+@@ -1311,6 +1311,13 @@ if test "x$HWLOC_CFLAGS" != "xnone"; the
+ fi
+ 
+ 
++PKG_CHECK_MODULES([JSONCPP], [jsoncpp],
++  [ CFLAGS="$CFLAGS $JSONCPP_CFLAGS"; CPPFLAGS="$CPPFLAGS $JSONCPP_CFLAGS"; ],
++  [ AC_MSG_ERROR([$JSONCPP_PKG_ERRORS])])
++
++LIBS="$LIBS $JSONCPP_LIBS";
++
++
+ dnl enable pbs_mom to use the cpuset API from libcpuset
+ dnl only makes sense with cpusets enabled
+ AC_ARG_ENABLE(libcpuset, [  --enable-libcpuset      Allows pbs_mom to use the cpuset API from libcpuset])
+diff -up torque/src/include/machine.hpp.system-jsoncpp torque/src/include/machine.hpp
+--- torque/src/include/machine.hpp.system-jsoncpp	2021-01-28 17:15:46.295362401 -0500
++++ torque/src/include/machine.hpp	2021-01-28 17:15:58.310420979 -0500
+@@ -14,7 +14,7 @@
+ #include "pbs_job.h"
+ #include "req.hpp"
+ #include "allocation.hpp"
+-#include "json/json.h"
++#include <json/json.h>
+ extern const int ALL_TASKS;
+ 
+ 
+diff -up torque/src/include/Makefile.am.system-jsoncpp torque/src/include/Makefile.am
+--- torque/src/include/Makefile.am.system-jsoncpp	2021-01-28 17:15:10.067185774 -0500
++++ torque/src/include/Makefile.am	2021-01-28 17:15:22.285245341 -0500
+@@ -27,8 +27,8 @@ noinst_HEADERS = acct.h array.h assertio
+ 		 job_usage_info.hpp machine.hpp req.hpp complete_req.hpp trq_cgroups.h \
+ 		 job_recovery.h allocation.hpp attr_req_info.hpp acl_special.hpp restricted_host.hpp \
+ 		 pbs_helper.h mail_throttler.hpp lib_ifl.h runjob_help.hpp pmix_tracker.hpp \
+-		 pmix_operation.hpp job_host_data.hpp policy_values.h plugin_internal.h json/json.h \
+-		 json/json-forwards.h authorized_hosts.hpp numa_constants.h
++		 pmix_operation.hpp job_host_data.hpp policy_values.h plugin_internal.h \
++		 authorized_hosts.hpp numa_constants.h
+ 
+ BUILT_SOURCES = site_job_attr_def.h site_job_attr_enum.h \
+ 		site_qmgr_node_print.h site_qmgr_que_print.h \
+diff -up torque/src/include/pbs_job.h.system-jsoncpp torque/src/include/pbs_job.h
+--- torque/src/include/pbs_job.h.system-jsoncpp	2021-01-28 17:16:09.054473361 -0500
++++ torque/src/include/pbs_job.h	2021-01-28 17:18:26.715144482 -0500
+@@ -104,7 +104,7 @@
+ #include "tcp.h" /* tcp_chan */
+ #include "net_connect.h"
+ #include "job_host_data.hpp"
+-#include "json/json.h"
++#include <json/json.h>
+ 
+ 
+ #define SAVEJOB_BUF_SIZE 8192
+diff -up torque/src/lib/Libutils/Makefile.am.system-jsoncpp torque/src/lib/Libutils/Makefile.am
+--- torque/src/lib/Libutils/Makefile.am.system-jsoncpp	2021-01-28 17:19:31.650461068 -0500
++++ torque/src/lib/Libutils/Makefile.am	2021-01-28 17:19:42.934516083 -0500
+@@ -10,6 +10,6 @@ noinst_LIBRARIES = libutils.a
+ libutils_a_SOURCES = u_groups.c u_tree.c u_mu.c u_MXML.c u_xml.c u_threadpool.c u_lock_ctl.c \
+ 										 u_mom_hierarchy.c u_hash_map_structs.c u_users.c u_constants.c u_mutex_mgr.cpp \
+ 										 u_misc.c u_putenv.c u_wrapper.c u_timer.cpp machine.cpp numa_chip.cpp \
+-										 numa_core.cpp numa_pci_device.cpp numa_socket.cpp allocation.cpp jsoncpp.cpp \
++										 numa_core.cpp numa_pci_device.cpp numa_socket.cpp allocation.cpp \
+ 										 authorized_hosts.cpp numa_constants.cpp
+ 
+diff -up torque/src/resmom/catch_child.c.system-jsoncpp torque/src/resmom/catch_child.c
+--- torque/src/resmom/catch_child.c.system-jsoncpp	2021-01-28 17:20:20.852700949 -0500
++++ torque/src/resmom/catch_child.c	2021-01-28 17:20:32.701758691 -0500
+@@ -51,7 +51,7 @@
+ #include "pbs_cpuset.h"
+ #endif
+ #include "mom_config.h"
+-#include "json/json.h"
++#include <json/json.h>
+ 
+ #define DIS_REPLY_READ_RETRY 10
+ 
+diff -up torque/src/resmom/mom_server.c.system-jsoncpp torque/src/resmom/mom_server.c
+--- torque/src/resmom/mom_server.c.system-jsoncpp	2021-01-28 17:20:47.497830825 -0500
++++ torque/src/resmom/mom_server.c	2021-01-28 17:21:04.386913166 -0500
+@@ -251,7 +251,7 @@
+ #include "machine.hpp"
+ #endif
+ #ifdef USE_RESOURCE_PLUGIN
+-#include "json/json.h"
++#include <json/json.h>
+ #include "trq_plugin_api.h"
+ #include "plugin_internal.h"
+ #endif
+diff -up torque/src/resmom/parse_config.c.system-jsoncpp torque/src/resmom/parse_config.c
+--- torque/src/resmom/parse_config.c.system-jsoncpp	2021-01-28 17:21:14.600962963 -0500
++++ torque/src/resmom/parse_config.c	2021-01-28 17:21:26.865022756 -0500
+@@ -99,7 +99,7 @@
+ #include "mom_func.h"
+ #include "authorized_hosts.hpp"
+ #include "csv.h"
+-#include "json/json.h"
++#include <json/json.h>
+ #include "req.hpp"
+ 
+ void encode_used(job *pjob, int perm, Json::Value *, tlist_head *phead);
+diff -up torque/src/resmom/prolog.c.system-jsoncpp torque/src/resmom/prolog.c
+--- torque/src/resmom/prolog.c.system-jsoncpp	2021-01-28 17:21:37.352073884 -0500
++++ torque/src/resmom/prolog.c	2021-01-28 17:21:49.191131604 -0500
+@@ -108,7 +108,7 @@
+ #include "net_connect.h"
+ #include "utils.h"
+ #include "mom_config.h"
+-#include "json/json.h"
++#include <json/json.h>
+ 
+ 
+ const int   PELOG_DOESNT_EXIST = -1;
+diff -up torque/src/resmom/requests.c.system-jsoncpp torque/src/resmom/requests.c
+--- torque/src/resmom/requests.c.system-jsoncpp	2021-01-28 17:22:05.545211337 -0500
++++ torque/src/resmom/requests.c	2021-01-28 17:22:16.108262836 -0500
+@@ -123,7 +123,7 @@
+ #include "power_state.hpp"
+ #ifdef USE_RESOURCE_PLUGIN
+ #include "plugin_internal.h"
+-#include "json/json.h"
++#include <json/json.h>
+ #endif
+ 
+ #ifdef _CRAY
+diff -up torque/src/server/job.cpp.system-jsoncpp torque/src/server/job.cpp
+--- torque/src/server/job.cpp.system-jsoncpp	2021-01-28 17:22:46.476410893 -0500
++++ torque/src/server/job.cpp	2021-01-28 17:22:57.246463402 -0500
+@@ -1,7 +1,7 @@
+ #include <pbs_config.h>
+ #include "pbs_job.h"
+ #include "log.h"
+-#include "json/json.h"
++#include <json/json.h>
+ 
+ 
+ /**
+diff -up torque/src/server/node_manager.c.system-jsoncpp torque/src/server/node_manager.c
+--- torque/src/server/node_manager.c.system-jsoncpp	2021-01-28 17:24:40.798968223 -0500
++++ torque/src/server/node_manager.c	2021-01-28 17:24:52.041023032 -0500
+@@ -140,7 +140,7 @@
+ #endif
+ #include "runjob_help.hpp"
+ #include "plugin_internal.h"
+-#include "json/json.h"
++#include <json/json.h>
+ #include "authorized_hosts.hpp"
+ 
+ #define IS_VALID_STR(STR)  (((STR) != NULL) && ((STR)[0] != '\0'))
+diff -up torque/src/server/pbsnode.cpp.system-jsoncpp torque/src/server/pbsnode.cpp
+--- torque/src/server/pbsnode.cpp.system-jsoncpp	2021-01-28 17:22:27.386317821 -0500
++++ torque/src/server/pbsnode.cpp	2021-01-28 17:22:38.162370359 -0500
+@@ -9,7 +9,7 @@
+ #include "../lib/Libnet/lib_net.h" /* pbs_getaddrinfo */
+ #include "alps_constants.h"
+ #include "policy_values.h"
+-#include "json/json.h"
++#include <json/json.h>
+ #include "plugin_internal.h"
+ 
+ #define MSG_LEN_LONG 160
+diff -up torque/src/test/catch_child/scaffolding.c.system-jsoncpp torque/src/test/catch_child/scaffolding.c
+--- torque/src/test/catch_child/scaffolding.c.system-jsoncpp	2021-01-28 17:25:02.101072079 -0500
++++ torque/src/test/catch_child/scaffolding.c	2021-01-28 17:25:14.307131588 -0500
+@@ -20,7 +20,7 @@
+ #include "mom_func.h"
+ #include "mom_job_cleanup.h"
+ #include "complete_req.hpp"
+-#include "json/json.h"
++#include <json/json.h>
+ 
+ int server_down;
+ int called_open_socket = 0;
+diff -up torque/src/test/job/test_uut.c.system-jsoncpp torque/src/test/job/test_uut.c
+--- torque/src/test/job/test_uut.c.system-jsoncpp	2021-01-28 17:25:24.008178885 -0500
++++ torque/src/test/job/test_uut.c	2021-01-28 17:25:33.824226742 -0500
+@@ -5,7 +5,7 @@
+ 
+ #include "pbs_error.h"
+ #include "pbs_job.h"
+-#include "json/json.h"
++#include <json/json.h>
+ #include <check.h>
+ 
+ extern attribute_def job_attr_def[];
+diff -up torque/src/test/machine/scaffolding.c.system-jsoncpp torque/src/test/machine/scaffolding.c
+--- torque/src/test/machine/scaffolding.c.system-jsoncpp	2021-01-28 17:26:18.917446590 -0500
++++ torque/src/test/machine/scaffolding.c	2021-01-28 17:26:28.467493151 -0500
+@@ -6,7 +6,7 @@
+ #include "pbs_error.h"
+ #include "allocation.hpp"
+ #include "complete_req.hpp"
+-#include "json/json.h"
++#include <json/json.h>
+ #include "numa_constants.h"
+ 
+ int num_for_host;
+diff -up torque/src/test/machine/test_uut.c.system-jsoncpp torque/src/test/machine/test_uut.c
+--- torque/src/test/machine/test_uut.c.system-jsoncpp	2021-01-28 17:26:37.960539433 -0500
++++ torque/src/test/machine/test_uut.c	2021-01-28 17:26:48.545591403 -0500
+@@ -9,7 +9,7 @@
+ #include "pbs_job.h"
+ #include "complete_req.hpp"
+ #include "pbs_config.h"
+-#include "json/json.h"
++#include <json/json.h>
+ 
+ extern int hardware_style;
+ 
+diff -up torque/src/test/node_manager/scaffolding.c.system-jsoncpp torque/src/test/node_manager/scaffolding.c
+--- torque/src/test/node_manager/scaffolding.c.system-jsoncpp	2021-01-28 17:25:45.583284073 -0500
++++ torque/src/test/node_manager/scaffolding.c	2021-01-28 17:25:57.028339872 -0500
+@@ -21,7 +21,7 @@
+ #include "id_map.hpp"
+ #include "machine.hpp"
+ #include "complete_req.hpp"
+-#include "json/json.h"
++#include <json/json.h>
+ #include "authorized_hosts.hpp"
+ 
+ 
+diff -up torque/src/test/node_manager/test_uut.c.system-jsoncpp torque/src/test/node_manager/test_uut.c
+--- torque/src/test/node_manager/test_uut.c.system-jsoncpp	2021-01-28 17:26:59.731646817 -0500
++++ torque/src/test/node_manager/test_uut.c	2021-01-28 17:27:08.815691817 -0500
+@@ -12,7 +12,7 @@
+ #include "test_uut.h"
+ #include "pbs_error.h"
+ #include "server.h"
+-#include "json/json.h"
++#include <json/json.h>
+ #include "complete_req.hpp"
+ #include "pbs_nodes.h"
+ 
+diff -up torque/src/test/numa_chip/scaffolding.c.system-jsoncpp torque/src/test/numa_chip/scaffolding.c
+--- torque/src/test/numa_chip/scaffolding.c.system-jsoncpp	2021-01-28 17:27:17.770736185 -0500
++++ torque/src/test/numa_chip/scaffolding.c	2021-01-28 17:27:25.892776426 -0500
+@@ -4,7 +4,7 @@
+ #include "log.h"
+ #include "pbs_error.h"
+ #include "machine.hpp"
+-#include "json/json.h"
++#include <json/json.h>
+ #include "numa_constants.h"
+ 
+ const char  *use_cores = "usecores";
+diff -up torque/src/test/numa_chip/test_uut.c.system-jsoncpp torque/src/test/numa_chip/test_uut.c
+--- torque/src/test/numa_chip/test_uut.c.system-jsoncpp	2021-01-28 17:27:33.612814672 -0500
++++ torque/src/test/numa_chip/test_uut.c	2021-01-28 17:27:41.267852594 -0500
+@@ -6,7 +6,7 @@
+ #include "hwloc.h"
+ #include "pbs_error.h"
+ #include <sstream>
+-#include "json/json.h"
++#include <json/json.h>
+ 
+ extern int recorded;
+ 
+diff -up torque/src/test/numa_socket/scaffolding.c.system-jsoncpp torque/src/test/numa_socket/scaffolding.c
+--- torque/src/test/numa_socket/scaffolding.c.system-jsoncpp	2021-01-28 17:27:51.494903256 -0500
++++ torque/src/test/numa_socket/scaffolding.c	2021-01-28 17:28:01.090950793 -0500
+@@ -6,7 +6,7 @@
+ #include "pbs_error.h"
+ #include "req.hpp"
+ #include "allocation.hpp"
+-#include "json/json.h"
++#include <json/json.h>
+ 
+ int hardware_style;
+ float tasks;
+diff -up torque/src/test/numa_socket/test_uut.c.system-jsoncpp torque/src/test/numa_socket/test_uut.c
+--- torque/src/test/numa_socket/test_uut.c.system-jsoncpp	2021-01-28 17:28:13.915014321 -0500
++++ torque/src/test/numa_socket/test_uut.c	2021-01-28 17:28:22.609057389 -0500
+@@ -8,7 +8,7 @@
+ #include "pbs_error.h"
+ #include "allocation.hpp"
+ #include "req.hpp"
+-#include "json/json.h"
++#include <json/json.h>
+ 
+ extern float tasks;
+ extern int placed;
+diff -up torque/src/test/parse_config/scaffolding.c.system-jsoncpp torque/src/test/parse_config/scaffolding.c
+--- torque/src/test/parse_config/scaffolding.c.system-jsoncpp	2021-01-28 17:29:00.388244539 -0500
++++ torque/src/test/parse_config/scaffolding.c	2021-01-28 17:29:10.473294499 -0500
+@@ -7,7 +7,7 @@
+ #include "pbs_job.h"
+ #include "u_tree.h"
+ #include "log.h"
+-#include "json/json.h"
++#include <json/json.h>
+ #include "authorized_hosts.hpp"
+ 
+ #define LOG_BUF_SIZE        16384
+diff -up torque/src/test/parse_config/test_uut.c.system-jsoncpp torque/src/test/parse_config/test_uut.c
+--- torque/src/test/parse_config/test_uut.c.system-jsoncpp	2021-01-28 17:28:40.823147618 -0500
++++ torque/src/test/parse_config/test_uut.c	2021-01-28 17:28:51.173198890 -0500
+@@ -5,7 +5,7 @@
+ 
+ #include "pbs_job.h"
+ #include "mom_func.h"
+-#include "json/json.h"
++#include <json/json.h>
+ 
+ extern int encode_used_ctr;
+ extern int encode_flagged_attrs_ctr;
+diff -up torque/src/test/prolog/scaffolding.c.system-jsoncpp torque/src/test/prolog/scaffolding.c
+--- torque/src/test/prolog/scaffolding.c.system-jsoncpp	2021-01-28 17:29:18.930336393 -0500
++++ torque/src/test/prolog/scaffolding.c	2021-01-28 17:29:28.645384519 -0500
+@@ -13,7 +13,7 @@
+ #include "libpbs.h" /* job_file */
+ #include "mom_config.h"
+ #include "mom_mach.h"
+-#include "json/json.h"
++#include <json/json.h>
+ 
+ #define MAXLINE 1024
+ 

torque.spec

@@ -73,10 +73,16 @@
 %global server_nameflags --with-default-server=%{server_name}
 
 Name:        torque
-Version:     4.2.10
+Version:     6.1.3
-Release:     30%{?dist}
+Release:     1%{?dist}
 Summary:     Tera-scale Open-source Resource and QUEue manager
-Source0:     http://www.adaptivecomputing.com/download/%{name}/%{name}-%{version}.tar.gz
+# Source0:   http://www.adaptivecomputing.com/download/%%{name}/%%{name}-%%{version}.tar.gz
+# git clone https://github.com/adaptivecomputing/torque.git
+# cd torque
+# git checkout 6.1.3
+# cd ..
+# tar cvfJ torque-6.1.3.tar.xz torque/
+Source0:     %{name}-%{version}.tar.xz
 Source2:     xpbs.desktop
 Source3:     xpbsmon.desktop
 Source4:     xpbs.png
@@ -98,11 +104,14 @@ Source100:   pbs-config
 
 # https://bugzilla.redhat.com/show_bug.cgi?id=713996
 Patch1:      torque-munge-size.patch
-Patch2:      torque-%{version}-port-args.patch
+Patch2:      torque-6.1.3-port-args.patch
 # Fixes https://bugzilla.redhat.com/show_bug.cgi?id=1424149
-Patch3:      torque-%{version}-fix-bad-crypto-check.patch
+# Patch3:      torque-4.2.10-fix-bad-crypto-check.patch
-# From https://github.com/adaptivecomputing/torque/pull/148
+# Use system jsoncpp
-Patch4:      torque-%{version}-remove-unused-header.patch
+Patch4:      torque-6.1.3-system-jsoncpp.patch
+# Include stdbool.h to build pbs-drmaa
+Patch5:      torque-6.1.3-bool-fix.patch
+
 
 License:     OpenPBS and TORQUEv1.1
 URL:         http://www.adaptivecomputing.com/products/open-source/torque/
@@ -118,6 +127,9 @@ BuildRequires: openssl-devel
 BuildRequires: hwloc-devel
 BuildRequires: libxml2-devel
 BuildRequires: munge-devel
+BuildRequires: autoconf, automake, libtool
+BuildRequires: jsoncpp-devel
+
 %if %{use_tcl}
 BuildRequires: tcl-devel
 %endif
@@ -376,16 +388,17 @@ DRMAA is "Distributed Resource Management Application API"
 
 
 %prep
-%setup -q -n torque-%{version}
+%setup -q -n torque
-%patch1 -p 1
+%patch1 -p 1 -b .munge-size
-%patch2 -p 1
+%patch2 -p 1 -b .port-args
-%patch3 -p 0
+# %%patch3 -p 0 -b .fix-bad-crypto-check
-%patch4 -p 1
+%patch4 -p1 -b .system-jsoncpp
+%patch5 -p1 -b .bool-fix
+rm -rf src/lib/Libutils/jsoncpp.cpp src/include/json
 sed -i '/LATEX_BATCHMODE/d' src/drmaa/Doxyfile.in
 install -pm 644 %{SOURCE2} %{SOURCE3} %{SOURCE4} %{SOURCE5} \
    %{SOURCE6} %{SOURCE8} .
-# rm x bit on some documentation.
+autoreconf -ifv
-chmod 644 torque.setup
 
 %build
 # -fpermissive added to downgrade numerous 'invalid conversion' errors to warnings
@@ -411,6 +424,15 @@ done
 %install
 make DESTDIR=%{buildroot} INSTALL="install -p" install
 
+%if %{doxydoc}
+# spit and bailing wire.
+# make the drmaa docs and install the manpages.
+pushd src/drmaa
+doxygen
+install -p doc/man/man3/*.3 %{buildroot}%{_mandir}/man3/
+popd
+%endif
+
 # remove files we don't need
 rm -f %{buildroot}%{_libdir}/*.la
 rm -f %{buildroot}%{_libdir}/*/buildindex
@@ -502,18 +524,6 @@ ln -s %{_var}/log/torque/server_logs .
 popd
 
 
-# Move drmaa man pages to correct place 
-# and delete the three copies of the same documentation.
-
-%if 0%{?doxydoc}
-rm -f %{buildroot}%{_defaultdocdir}/torque-drmaa/man/man3/*_src_drmaa_src_.3
-mv %{buildroot}%{_defaultdocdir}/torque-drmaa/man/man3/* %{buildroot}%{_mandir}/man3/.
-rm -rf %{buildroot}%{_defaultdocdir}/torque-drmaa/html/*
-rm -rf %{buildroot}%{_defaultdocdir}/torque-drmaa/latex/*
-# Include drmaa.pdf later from the src tree.
-rm %{buildroot}%{_defaultdocdir}/torque-drmaa/drmaa.pdf
-%endif
-
 #Remove man page for binary that is not included.
 rm %{buildroot}%{_mandir}/man1/basl2c.1
 
@@ -524,6 +534,15 @@ chmod 755 `find %{buildroot}/var/lib/torque -type d`
 mv %{buildroot}%{_bindir}/pbs-config %{buildroot}%{_bindir}/pbs-config-%{uname_m_arch}
 install -m0755 -p %{SOURCE100} %{buildroot}%{_bindir}/pbs-config
 
+# We do not need a ld.so.conf.d file to point to %%{_libdir}
+rm -rf %{buildroot}%{_sysconfdir}/ld.so.conf.d
+
+# We also do not need profile.d files to put /usr/bin and /usr/sbin in the path
+rm -rf %{buildroot}%{_sysconfdir}/profile.d
+
+# It also installs a ton of binary stuff under /usr/share/doc/torque-drmaa that is not useful
+rm -rf %{buildroot}%{_datadir}/doc/torque-drmaa
+
 %post
 # fix mistake in previous release
 sed -i '/pbs_mon/D' /etc/services
@@ -737,7 +756,7 @@ fi
 %files docs
 %doc doc/admin_guide.ps
 %if 0%{?doxydoc}
-%doc src/drmaa/drmaa.pdf
+# %%doc src/drmaa/doc/drmaa.pdf
 %endif
 
 %if %{build_gui}
@@ -868,21 +887,14 @@ fi
 %{_mandir}/man3/compat.h.3.*
 %{_mandir}/man3/drmaa.3.*
 %{_mandir}/man3/drmaa.h.3.*
-%{_mandir}/man3/drmaa_attr_names_s.3.*
-%{_mandir}/man3/drmaa_attr_values_s.3.*
 %{_mandir}/man3/drmaa_attrib.3.*
 %{_mandir}/man3/drmaa_attrib_info_s.3.*
-%{_mandir}/man3/drmaa_submission_context_s.3.*
-%{_mandir}/man3/drmaa_job_ids_s.3.*
 %{_mandir}/man3/drmaa_def_attr_s.3.*
-%{_mandir}/man3/pbs_attrib.3.*
-%{_mandir}/man3/drmaa_viter.3.*
 %{_mandir}/man3/drmaa_job_iter_s.3.*
 %{_mandir}/man3/drmaa_job_s.3.*
-%{_mandir}/man3/drmaa_job_template_s.3.*
 %{_mandir}/man3/drmaa_jobt.3.*
-%{_mandir}/man3/drmaa_session.3.*
+%{_mandir}/man3/drmaa_viter.3.*
-%{_mandir}/man3/drmaa_session_s.3.*
+%{_mandir}/man3/pbs_attrib.3.*
 %{_mandir}/man3/error.h.3.*
 %{_mandir}/man3/jobs.3.*
 %{_mandir}/man3/jobs.h.3.*
@@ -890,6 +902,9 @@ fi
 %endif
 
 %changelog
+* Fri Jan 29 2021 Tom Callaway <spot@fedoraproject.org> - 6.1.3-1
+- update to 6.1.3
+
 * Wed Jan 27 2021 Fedora Release Engineering <releng@fedoraproject.org> - 4.2.10-30
 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild