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Update to 1.10.1 

Resolves: rhbz#2172559
This commit is contained in:
Ryan Erickson 2023-05-02 19:27:51 -04:00
parent 8f79d271ba
commit 9b52d22960
4 changed files with 6 additions and 100 deletions
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1
.gitignore vendored
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@ -1,2 +1,3 @@
/scipy-1.8.1.tar.gz
/scipy-1.10.0.tar.gz
/scipy-1.10.1.tar.gz

93
fix-32bit-test-failures.patch
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@ -1,93 +0,0 @@
diff --git a/scipy/sparse/linalg/_isolve/tests/test_iterative.py b/scipy/sparse/linalg/_isolve/tests/test_iterative.py
index a782a8d27c2..48fc16b7a00 100644
--- a/scipy/sparse/linalg/_isolve/tests/test_iterative.py
+++ b/scipy/sparse/linalg/_isolve/tests/test_iterative.py
@@ -409,7 +409,9 @@ def test_atol(solver):
residual = A.dot(x) - b
err = np.linalg.norm(residual)
atol2 = tol * b_norm
- assert_(err <= max(atol, atol2))
+ # Added 1.00025 fudge factor because of `err` exceeding `atol` just
+ # very slightly on s390x (see gh-17839)
+ assert_(err <= 1.00025 * max(atol, atol2))
@pytest.mark.parametrize("solver", [cg, cgs, bicg, bicgstab, gmres, qmr, minres, lgmres, gcrotmk, tfqmr])
@@ -452,8 +454,10 @@ def test_zero_rhs(solver):
and sys.version_info[1] == 9,
reason="gh-13019")),
qmr,
- pytest.param(lgmres, marks=pytest.mark.xfail(platform.machine() == 'ppc64le',
- reason="fails on ppc64le")),
+ pytest.param(lgmres, marks=pytest.mark.xfail(
+ platform.machine() not in ['x86_64' 'x86', 'aarch64', 'arm64'],
+ reason="fails on at least ppc64le, ppc64 and riscv64, see gh-17839")
+ ),
pytest.param(cgs, marks=pytest.mark.xfail),
pytest.param(bicg, marks=pytest.mark.xfail),
pytest.param(bicgstab, marks=pytest.mark.xfail),
diff --git a/scipy/special/tests/test_orthogonal.py b/scipy/special/tests/test_orthogonal.py
index a325cb1a9ef..408b03bde2e 100644
--- a/scipy/special/tests/test_orthogonal.py
+++ b/scipy/special/tests/test_orthogonal.py
@@ -546,7 +546,7 @@ def test_roots_gegenbauer():
vgq(rootf(170), evalf(170), weightf(170), -1., 1., 5, atol=1e-13)
vgq(rootf(170), evalf(170), weightf(170), -1., 1., 25, atol=1e-12)
vgq(rootf(170), evalf(170), weightf(170), -1., 1., 100, atol=1e-11)
- vgq(rootf(170.5), evalf(170.5), weightf(170.5), -1., 1., 5, atol=1e-13)
+ vgq(rootf(170.5), evalf(170.5), weightf(170.5), -1., 1., 5, atol=1.25e-13)
vgq(rootf(170.5), evalf(170.5), weightf(170.5), -1., 1., 25, atol=1e-12)
vgq(rootf(170.5), evalf(170.5), weightf(170.5), -1., 1., 100, atol=1e-11)
diff --git a/scipy/stats/tests/test_distributions.py b/scipy/stats/tests/test_distributions.py
index eceeafdffe0..139b0537174 100644
--- a/scipy/stats/tests/test_distributions.py
+++ b/scipy/stats/tests/test_distributions.py
@@ -4254,7 +4254,7 @@ def test_pdf_nolan_samples(
],
# for small alpha very slightly reduced accuracy
[
- 'piecewise', 5e-11, lambda r: (
+ 'piecewise', 2.5e-10, lambda r: (
np.isin(r['pct'], pct_range) &
np.isin(r['alpha'], alpha_range) &
np.isin(r['beta'], beta_range) &
@@ -4358,7 +4358,7 @@ def test_cdf_nolan_samples(
tests = [
# piecewise generally good accuracy
[
- 'piecewise', 1e-12, lambda r: (
+ 'piecewise', 2e-12, lambda r: (
np.isin(r['pct'], pct_range) &
np.isin(r['alpha'], alpha_range) &
np.isin(r['beta'], beta_range) &
@@ -4480,6 +4480,14 @@ def test_location_scale(
):
"""Tests for pdf and cdf where loc, scale are different from 0, 1
"""
+
+ uname = platform.uname()
+ is_linux_32 = uname.system == 'Linux' and "32bit" in platform.architecture()[0]
+ # Test seems to be unstable (see gh-17839 for a bug report on Debian
+ # i386), so skip it.
+ if is_linux_32 and case == 'pdf':
+ pytest.skip("Test unstable on some platforms; see gh-17839, 17859")
+
data = nolan_loc_scale_sample_data
# We only test against piecewise as location/scale transforms
# are same for other methods.
diff --git a/scipy/stats/tests/test_mstats_basic.py b/scipy/stats/tests/test_mstats_basic.py
index cd53c7b7914..76cbfd8c253 100644
--- a/scipy/stats/tests/test_mstats_basic.py
+++ b/scipy/stats/tests/test_mstats_basic.py
@@ -1768,8 +1768,8 @@ def test_skewtest_2D_WithMask(self):
r = stats.skewtest(x)
rm = stats.mstats.skewtest(xm)
- assert_allclose(r[0][0], rm[0][0], rtol=2e-15)
- assert_allclose(r[0][1], rm[0][1], rtol=1e-15)
+ assert_allclose(r[0][0], rm[0][0], rtol=1e-14)
+ assert_allclose(r[0][1], rm[0][1], rtol=1e-14)
def test_normaltest(self):
with np.errstate(over='raise'), suppress_warnings() as sup:

10
python3.11-scipy.spec
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@ -21,7 +21,7 @@
Summary: Scientific Tools for Python
Name: python%{python3_pkgversion}-scipy
Version: 1.10.0
Version: 1.10.1
Release: 1%{?dist}
# BSD -- whole package except:
@ -31,11 +31,6 @@ License: BSD and Boost and Public Domain
Url: http://www.scipy.org/scipylib/index.html
Source0: https://github.com/scipy/scipy/releases/download/v%{version}/scipy-%{version}.tar.gz
# Fix some test failures on 32 bits
# https://github.com/scipy/scipy/pull/17859
# https://github.com/scipy/scipy/pull/17931
Patch0: fix-32bit-test-failures.patch
BuildRequires: fftw-devel, suitesparse-devel
BuildRequires: %{blaslib}-devel
BuildRequires: gcc-gfortran, swig, gcc-c++
@ -218,6 +213,9 @@ popd
%{python3_sitearch}/*.egg-info
%changelog
* Tue May 02 2023 Ryan Erickson <rerickso@redhat.com> - 1.10.1-1
- Update to 1.10.1
* Sun Feb 19 2023 Charalampos Stratakis <cstratak@redhat.com> - 1.10.0-1
- Update to 1.10.0

2
sources
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@ -1 +1 @@
SHA512 (scipy-1.10.0.tar.gz) = 13fec0a2c24b90617ad4701c43c54757c91d2c62ca4b9ea5e5c5d130177ba4d2bb8687aae9057b58c26d1a77e4291164bad7ba9e21352669c07ba18bf539ad32
SHA512 (scipy-1.10.1.tar.gz) = 767e1dee6285d98e4d58d8d8d1e3654b00e3216e9ad55455fc9473f1d044bef80ecce749bcd24d8f331367b882c9c3e6b652a6e901bb4296ddc7cc44699215b6