Auto sync2gitlab import of python3.11-scipy-1.10.0-1.el8.src.rpm

.gitignore

@@ -0,0 +1 @@
+/scipy-1.10.0.tar.gz

EMPTY

@@ -1 +0,0 @@
- 

fix-32bit-test-failures.patch

@@ -0,0 +1,93 @@
+diff --git a/scipy/sparse/linalg/_isolve/tests/test_iterative.py b/scipy/sparse/linalg/_isolve/tests/test_iterative.py
+index a782a8d27c2..48fc16b7a00 100644
+--- a/scipy/sparse/linalg/_isolve/tests/test_iterative.py
++++ b/scipy/sparse/linalg/_isolve/tests/test_iterative.py
+@@ -409,7 +409,9 @@ def test_atol(solver):
+         residual = A.dot(x) - b
+         err = np.linalg.norm(residual)
+         atol2 = tol * b_norm
+-        assert_(err <= max(atol, atol2))
++        # Added 1.00025 fudge factor because of `err` exceeding `atol` just
++        # very slightly on s390x (see gh-17839)
++        assert_(err <= 1.00025 * max(atol, atol2))
+ 
+ 
+ @pytest.mark.parametrize("solver", [cg, cgs, bicg, bicgstab, gmres, qmr, minres, lgmres, gcrotmk, tfqmr])
+@@ -452,8 +454,10 @@ def test_zero_rhs(solver):
+                                                 and sys.version_info[1] == 9,
+                                                 reason="gh-13019")),
+     qmr,
+-    pytest.param(lgmres, marks=pytest.mark.xfail(platform.machine() == 'ppc64le',
+-                                                 reason="fails on ppc64le")),
++    pytest.param(lgmres, marks=pytest.mark.xfail(
++        platform.machine() not in ['x86_64' 'x86', 'aarch64', 'arm64'],
++        reason="fails on at least ppc64le, ppc64 and riscv64, see gh-17839")
++    ),
+     pytest.param(cgs, marks=pytest.mark.xfail),
+     pytest.param(bicg, marks=pytest.mark.xfail),
+     pytest.param(bicgstab, marks=pytest.mark.xfail),
+diff --git a/scipy/special/tests/test_orthogonal.py b/scipy/special/tests/test_orthogonal.py
+index a325cb1a9ef..408b03bde2e 100644
+--- a/scipy/special/tests/test_orthogonal.py
++++ b/scipy/special/tests/test_orthogonal.py
+@@ -546,7 +546,7 @@ def test_roots_gegenbauer():
+     vgq(rootf(170), evalf(170), weightf(170), -1., 1., 5, atol=1e-13)
+     vgq(rootf(170), evalf(170), weightf(170), -1., 1., 25, atol=1e-12)
+     vgq(rootf(170), evalf(170), weightf(170), -1., 1., 100, atol=1e-11)
+-    vgq(rootf(170.5), evalf(170.5), weightf(170.5), -1., 1., 5, atol=1e-13)
++    vgq(rootf(170.5), evalf(170.5), weightf(170.5), -1., 1., 5, atol=1.25e-13)
+     vgq(rootf(170.5), evalf(170.5), weightf(170.5), -1., 1., 25, atol=1e-12)
+     vgq(rootf(170.5), evalf(170.5), weightf(170.5), -1., 1., 100, atol=1e-11)
+ 
+diff --git a/scipy/stats/tests/test_distributions.py b/scipy/stats/tests/test_distributions.py
+index eceeafdffe0..139b0537174 100644
+--- a/scipy/stats/tests/test_distributions.py
++++ b/scipy/stats/tests/test_distributions.py
+@@ -4254,7 +4254,7 @@ def test_pdf_nolan_samples(
+             ],
+             # for small alpha very slightly reduced accuracy
+             [
+-                'piecewise', 5e-11, lambda r: (
++                'piecewise', 2.5e-10, lambda r: (
+                     np.isin(r['pct'], pct_range) &
+                     np.isin(r['alpha'], alpha_range) &
+                     np.isin(r['beta'], beta_range) &
+@@ -4358,7 +4358,7 @@ def test_cdf_nolan_samples(
+         tests = [
+             # piecewise generally good accuracy
+             [
+-                'piecewise', 1e-12, lambda r: (
++                'piecewise', 2e-12, lambda r: (
+                     np.isin(r['pct'], pct_range) &
+                     np.isin(r['alpha'], alpha_range) &
+                     np.isin(r['beta'], beta_range) &
+@@ -4480,6 +4480,14 @@ def test_location_scale(
+     ):
+         """Tests for pdf and cdf where loc, scale are different from 0, 1
+         """
++
++        uname = platform.uname()
++        is_linux_32 = uname.system == 'Linux' and "32bit" in platform.architecture()[0]
++        # Test seems to be unstable (see gh-17839 for a bug report on Debian
++        # i386), so skip it.
++        if is_linux_32 and case == 'pdf':
++            pytest.skip("Test unstable on some platforms; see gh-17839, 17859")
++
+         data = nolan_loc_scale_sample_data
+         # We only test against piecewise as location/scale transforms
+         # are same for other methods.
+diff --git a/scipy/stats/tests/test_mstats_basic.py b/scipy/stats/tests/test_mstats_basic.py
+index cd53c7b7914..76cbfd8c253 100644
+--- a/scipy/stats/tests/test_mstats_basic.py
++++ b/scipy/stats/tests/test_mstats_basic.py
+@@ -1768,8 +1768,8 @@ def test_skewtest_2D_WithMask(self):
+                 r = stats.skewtest(x)
+                 rm = stats.mstats.skewtest(xm)
+ 
+-                assert_allclose(r[0][0], rm[0][0], rtol=2e-15)
+-                assert_allclose(r[0][1], rm[0][1], rtol=1e-15)
++                assert_allclose(r[0][0], rm[0][0], rtol=1e-14)
++                assert_allclose(r[0][1], rm[0][1], rtol=1e-14)
+ 
+     def test_normaltest(self):
+         with np.errstate(over='raise'), suppress_warnings() as sup:

python3.11-scipy.spec

@@ -0,0 +1,287 @@
+%global __python3 /usr/bin/python3.11
+%global python3_pkgversion 3.11
+
+# Pythran is an optional build dependency.
+# When used, it makes some modules faster,
+# but it is usually not available soon enough for new major Python versions.
+%bcond_with pythran
+
+# Set to pre-release version suffix if building pre-release, else %%{nil}
+%global rcver %{nil}
+
+%if 0%{?fedora} >= 33 || 0%{?rhel} >= 9
+%global blaslib flexiblas
+%global blasvar %{nil}
+%else
+%global blaslib openblas
+%global blasvar p
+%endif
+
+%global modname scipy
+
+Summary:    Scientific Tools for Python
+Name:       python%{python3_pkgversion}-scipy
+Version:    1.10.0
+Release:    1%{?dist}
+
+# BSD -- whole package except:
+# Boost -- scipy/special/cephes/scipy_iv.c
+# Public Domain -- scipy/odr/__odrpack.c
+License:    BSD and Boost and Public Domain
+Url:        http://www.scipy.org/scipylib/index.html
+Source0:    https://github.com/scipy/scipy/releases/download/v%{version}/scipy-%{version}.tar.gz
+
+# Fix some test failures on 32 bits
+# https://github.com/scipy/scipy/pull/17859
+# https://github.com/scipy/scipy/pull/17931
+Patch0:     fix-32bit-test-failures.patch
+
+BuildRequires: fftw-devel, suitesparse-devel
+BuildRequires: %{blaslib}-devel
+BuildRequires: gcc-gfortran, swig, gcc-c++
+BuildRequires: qhull-devel
+
+BuildRequires:  python%{python3_pkgversion}-pybind11-devel
+BuildRequires:  python%{python3_pkgversion}-pybind11 >= 2.4.0
+BuildRequires:  python%{python3_pkgversion}-numpy, python%{python3_pkgversion}-devel, python%{python3_pkgversion}-numpy-f2py
+BuildRequires:  python%{python3_pkgversion}-rpm-macros
+BuildRequires:  python%{python3_pkgversion}-setuptools
+BuildRequires:  python%{python3_pkgversion}-Cython
+BuildRequires:  python%{python3_pkgversion}-pytest
+
+%if %{with pythran}
+BuildRequires:  pythran
+%endif
+
+Requires:   python%{python3_pkgversion}-numpy, python%{python3_pkgversion}-f2py
+
+%global _description %{expand:
+Scipy is open-source software for mathematics, science, and
+engineering. The core library is NumPy which provides convenient and
+fast N-dimensional array manipulation. The SciPy library is built to
+work with NumPy arrays, and provides many user-friendly and efficient
+numerical routines such as routines for numerical integration and
+optimization. Together, they run on all popular operating systems, are
+quick to install, and are free of charge. NumPy and SciPy are easy to
+use, but powerful enough to be depended upon by some of the world's
+leading scientists and engineers.}
+
+%description %_description
+
+%prep
+%autosetup -p1 -n %{modname}-%{version}%{?rcver}
+cat > site.cfg << EOF
+
+[amd]
+library_dirs = %{_libdir}
+include_dirs = /usr/include/suitesparse
+amd_libs = amd
+
+[umfpack]
+library_dirs = %{_libdir}
+include_dirs = /usr/include/suitesparse
+umfpack_libs = umfpack
+
+[openblas]
+libraries = %{blaslib}%{blasvar}
+library_dirs = %{_libdir}
+EOF
+
+rm $(grep -rl '/\* Generated by Cython') PKG-INFO
+
+%build
+export SCIPY_USE_PYTHRAN=0%{?with_pythran}
+
+for PY in %{python3_pkgversion}; do
+  # Adding -fallow-argument-mismatch workaround for https://github.com/scipy/scipy/issues/11611
+  env CFLAGS="$RPM_OPT_FLAGS -lm" \
+      FFLAGS="$RPM_OPT_FLAGS -fPIC -cpp" \
+      LDFLAGS="$RPM_LD_FLAGS -shared" \
+  %if 0%{?rhel} >= 9
+  %ifarch x86_64
+      # workaround for https://bugzilla.redhat.com/show_bug.cgi?id=2068530
+      LDFLAGS="%{__global_ldflags} -Wl,--no-as-needed -lmvec -Wl,--as-needed" \
+  %endif
+  %endif
+    %{_bindir}/python$PY setup.py config_fc \
+    --fcompiler=gnu95 --noarch \
+    build
+
+done
+
+%install
+export SCIPY_USE_PYTHRAN=0%{?with_pythran}
+
+%py3_install
+# Some files got ambiguous python shebangs, we fix them after everything else is done
+%py3_shebang_fix %{buildroot}%{python3_sitearch}
+
+%check
+# check against the reference BLAS/LAPACK
+export FLEXIBLAS=netlib
+
+
+# https://github.com/scipy/scipy/issues/17912
+SKIP_ALL_ARCHS="\
+not TestDatasets and \
+not TestOde and \
+not TestComplexOde and \
+not TestVODECheckParameterUse and \
+not TestZVODECheckParameterUse and \
+not test_banded_ode_solvers and \
+not test_examples[True-complex64]"
+
+# skip also failing test_sygst for now
+SKIP_X86_64="-k '$SKIP_ALL_ARCHS and \
+not test_sygst'"
+
+# https://bugzilla.redhat.com/show_bug.cgi?id=1959353
+# TestConstructUtils::test_concatenate_int32_overflow is flaky on aarch64
+SKIP_AARCH64="-k '$SKIP_ALL_ARCHS and \
+not test_solve_discrete_are and \
+not test_maxiter_worsening[lgmres] and \
+not test_concatenate_int32_overflow'"
+
+# Those tests fail on koji/brew for ppc64le but pass
+# locally for that architecture
+SKIP_PPC64LE="-k '$SKIP_ALL_ARCHS and \
+not TestFFTConvolve and \
+not TestDoubleFFT and \
+not TestSingleFFT and \
+not TestDoubleIFFT and \
+not TestSingleIFFT and \
+not test_tpsv and \
+not TestLinear and \
+not test_various_drivers_standard and \
+not test_Mx1_economic and \
+not test_hegst and \
+not test_tpqrt_tpmqrt and \
+not test_pteqr and \
+not test_pptrs_pptri_pptrf_ppsv_ppcon and \
+not test_against_numpy_convolve and \
+not test_convolve_method and \
+not test_rank1 and \
+not test_splu_smoketest and \
+not test_spilu_smoketest and \
+not test_threads_parallel and \
+not test_hermitian and \
+not test_convergence and \
+not test_precond_dummy and \
+not test_x0_equals_Mb and \
+not test_svdp and \
+not test_examples'"
+
+# https://bugzilla.redhat.com/show_bug.cgi?id=1959353
+SKIP_S390X="-k '$SKIP_ALL_ARCHS and \
+not test_solve_discrete_are and \
+not test_maxiter_worsening[lgmres] and \
+not TestInterop and \
+not TestSplder and \
+not test_dblint and \
+not TestUnivariateSpline and \
+not TestLSQBivariateSpline and \
+not TestPPoly and \
+not TestLevyStable'"
+
+# skip also test_cython_api: https://bugzilla.redhat.com/show_bug.cgi?id=2068496
+# https://github.com/scipy/scipy/issues/17213
+SKIP_32BIT="-k '$SKIP_ALL_ARCHS and \
+not test_sygst and \
+not test_cython_api and \
+not test_examples and \
+not test_shifts and \
+not test_mu and \
+not test_sum and \
+not test_svdp and \
+not test_resiliency_all_32 and \
+not test_resiliency_random[TestCSC-test_sum_dtype] and \
+not test_x0_equals_Mb[bicgstab] and \
+not test_gh12218'"
+
+export PYTEST_ADDOPTS="-k '$SKIP_ALL_ARCHS'"
+# default test timeout
+TIMEOUT=500
+
+%ifarch x86_64
+export PYTEST_ADDOPTS=$SKIP_X86_64
+%endif
+
+%ifarch aarch64
+export PYTEST_ADDOPTS=$SKIP_AARCH64
+TIMEOUT=1000
+%endif
+
+%ifarch ppc64le
+export PYTEST_ADDOPTS=$SKIP_PPC64LE
+TIMEOUT=1000
+%endif
+
+%ifarch s390x
+export PYTEST_ADDOPTS=$SKIP_S390X
+TIMEOUT=1000
+%endif
+
+%ifarch armv7hl
+export PYTEST_ADDOPTS=$SKIP_32BIT
+%endif
+
+%ifarch i686
+export PYTEST_ADDOPTS=$SKIP_32BIT
+%endif
+
+pushd %{buildroot}/%{python3_sitearch}
+# Ignoring the datasets tests as we don't have the optional pooch
+# dependency on RHEL.
+%{pytest} --ignore=scipy/datasets/tests/test_data.py scipy
+# Remove test remnants
+rm -rf gram{A,B}
+popd
+
+%files -n python%{python3_pkgversion}-scipy
+%doc LICENSE.txt
+%{python3_sitearch}/scipy/
+%{python3_sitearch}/*.egg-info
+
+%changelog
+* Sun Feb 19 2023 Charalampos Stratakis <cstratak@redhat.com> - 1.10.0-1
+- Update to 1.10.0
+
+* Thu Dec 01 2022 Charalampos Stratakis <cstratak@redhat.com> - 1.8.1-1
+- Initial package
+- Fedora contributions by:
+      Antonio Trande <anto.trande@gmail.com>
+      Bill Nottingham <notting@fedoraproject.org>
+      Björn Esser <me@besser82.io>
+      Charalampos Stratakis <cstratak@redhat.com>
+      Christian Dersch <lupinix@mailbox.org>
+      David Malcolm <dmalcolm@redhat.com>
+      Deji Akingunola <deji@fedoraproject.org>
+      Dennis Gilmore <dennis@ausil.us>
+      Elliott Sales de Andrade <quantum.analyst@gmail.com>
+      Ignacio Vazquez-Abrams <ivazquez@fedoraproject.org>
+      Igor Gnatenko <ignatenkobrain@fedoraproject.org>
+      Iñaki Úcar <iucar@fedoraproject.org>
+      Jef Spaleta <jspaleta@fedoraproject.org>
+      Jesse Keating <jkeating@fedoraproject.org>
+      Jitka Plesnikova <jplesnik@redhat.com>
+      Jonathan Wakely <jwakely@redhat.com>
+      Jon Ciesla <limb@fedoraproject.org>
+      Kalev Lember <klember@redhat.com>
+      Kevin Fenzi <kevin@scrye.com>
+      Lumir Balhar <lbalhar@redhat.com>
+      Mamoru TASAKA <mtasaka@fedoraproject.org>
+      Marcel Plch <mplch@redhat.com>
+      Miro Hrončok <miro@hroncok.cz>
+      Nikola Forró <nforro@redhat.com>
+      Nils Philippsen <nils@redhat.com>
+      Orion Poplawski <orion@nwra.com>
+      Pavel Šimovec <psimovec@redhat.com>
+      Peter Robinson <pbrobinson@fedoraproject.org>
+      Petr Viktorin <pviktori@redhat.com>
+      Robert Kuska <rkuska@redhat.com>
+      Than Ngo <than@redhat.com>
+      Thomas Spura <thomas.spura@gmail.com>
+      Tomas Tomecek <ttomecek@redhat.com>
+      Toshio Kuratomi <toshio@fedoraproject.org>
+      Troy Dawson <tdawson@fedoraproject.org>
+      Zbigniew Jędrzejewski-Szmek <zbyszek@in.waw.pl>

sources

@@ -0,0 +1 @@
+SHA512 (scipy-1.10.0.tar.gz) = 13fec0a2c24b90617ad4701c43c54757c91d2c62ca4b9ea5e5c5d130177ba4d2bb8687aae9057b58c26d1a77e4291164bad7ba9e21352669c07ba18bf539ad32