import UBI python3.11-scipy-1.10.1-2.el9
This commit is contained in:
eabdullin
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2
.gitignore
vendored
2
.gitignore
vendored
@ -1 +1 @@
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SOURCES/scipy-1.10.0.tar.gz
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SOURCES/scipy-1.10.1.tar.gz
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@ -1 +1 @@
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8094557cc6c2d2ec32faf2a9b33ed41b3a8acecc SOURCES/scipy-1.10.0.tar.gz
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ff83163396a70276c0441b541befc485b471b27b SOURCES/scipy-1.10.1.tar.gz
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@ -1,93 +0,0 @@
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diff --git a/scipy/sparse/linalg/_isolve/tests/test_iterative.py b/scipy/sparse/linalg/_isolve/tests/test_iterative.py
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index a782a8d27c2..48fc16b7a00 100644
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--- a/scipy/sparse/linalg/_isolve/tests/test_iterative.py
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+++ b/scipy/sparse/linalg/_isolve/tests/test_iterative.py
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@@ -409,7 +409,9 @@ def test_atol(solver):
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residual = A.dot(x) - b
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err = np.linalg.norm(residual)
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atol2 = tol * b_norm
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- assert_(err <= max(atol, atol2))
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+ # Added 1.00025 fudge factor because of `err` exceeding `atol` just
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+ # very slightly on s390x (see gh-17839)
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+ assert_(err <= 1.00025 * max(atol, atol2))
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@pytest.mark.parametrize("solver", [cg, cgs, bicg, bicgstab, gmres, qmr, minres, lgmres, gcrotmk, tfqmr])
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@@ -452,8 +454,10 @@ def test_zero_rhs(solver):
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and sys.version_info[1] == 9,
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reason="gh-13019")),
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qmr,
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- pytest.param(lgmres, marks=pytest.mark.xfail(platform.machine() == 'ppc64le',
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- reason="fails on ppc64le")),
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+ pytest.param(lgmres, marks=pytest.mark.xfail(
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+ platform.machine() not in ['x86_64' 'x86', 'aarch64', 'arm64'],
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+ reason="fails on at least ppc64le, ppc64 and riscv64, see gh-17839")
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+ ),
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pytest.param(cgs, marks=pytest.mark.xfail),
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pytest.param(bicg, marks=pytest.mark.xfail),
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pytest.param(bicgstab, marks=pytest.mark.xfail),
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diff --git a/scipy/special/tests/test_orthogonal.py b/scipy/special/tests/test_orthogonal.py
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index a325cb1a9ef..408b03bde2e 100644
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--- a/scipy/special/tests/test_orthogonal.py
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+++ b/scipy/special/tests/test_orthogonal.py
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@@ -546,7 +546,7 @@ def test_roots_gegenbauer():
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vgq(rootf(170), evalf(170), weightf(170), -1., 1., 5, atol=1e-13)
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vgq(rootf(170), evalf(170), weightf(170), -1., 1., 25, atol=1e-12)
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vgq(rootf(170), evalf(170), weightf(170), -1., 1., 100, atol=1e-11)
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- vgq(rootf(170.5), evalf(170.5), weightf(170.5), -1., 1., 5, atol=1e-13)
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+ vgq(rootf(170.5), evalf(170.5), weightf(170.5), -1., 1., 5, atol=1.25e-13)
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vgq(rootf(170.5), evalf(170.5), weightf(170.5), -1., 1., 25, atol=1e-12)
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vgq(rootf(170.5), evalf(170.5), weightf(170.5), -1., 1., 100, atol=1e-11)
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diff --git a/scipy/stats/tests/test_distributions.py b/scipy/stats/tests/test_distributions.py
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index eceeafdffe0..139b0537174 100644
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--- a/scipy/stats/tests/test_distributions.py
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+++ b/scipy/stats/tests/test_distributions.py
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@@ -4254,7 +4254,7 @@ def test_pdf_nolan_samples(
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],
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# for small alpha very slightly reduced accuracy
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[
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- 'piecewise', 5e-11, lambda r: (
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+ 'piecewise', 2.5e-10, lambda r: (
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np.isin(r['pct'], pct_range) &
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np.isin(r['alpha'], alpha_range) &
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np.isin(r['beta'], beta_range) &
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@@ -4358,7 +4358,7 @@ def test_cdf_nolan_samples(
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tests = [
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# piecewise generally good accuracy
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[
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- 'piecewise', 1e-12, lambda r: (
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+ 'piecewise', 2e-12, lambda r: (
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np.isin(r['pct'], pct_range) &
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np.isin(r['alpha'], alpha_range) &
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np.isin(r['beta'], beta_range) &
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@@ -4480,6 +4480,14 @@ def test_location_scale(
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):
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"""Tests for pdf and cdf where loc, scale are different from 0, 1
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"""
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+
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+ uname = platform.uname()
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+ is_linux_32 = uname.system == 'Linux' and "32bit" in platform.architecture()[0]
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+ # Test seems to be unstable (see gh-17839 for a bug report on Debian
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+ # i386), so skip it.
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+ if is_linux_32 and case == 'pdf':
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+ pytest.skip("Test unstable on some platforms; see gh-17839, 17859")
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+
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data = nolan_loc_scale_sample_data
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# We only test against piecewise as location/scale transforms
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# are same for other methods.
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diff --git a/scipy/stats/tests/test_mstats_basic.py b/scipy/stats/tests/test_mstats_basic.py
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index cd53c7b7914..76cbfd8c253 100644
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--- a/scipy/stats/tests/test_mstats_basic.py
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+++ b/scipy/stats/tests/test_mstats_basic.py
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@@ -1768,8 +1768,8 @@ def test_skewtest_2D_WithMask(self):
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r = stats.skewtest(x)
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rm = stats.mstats.skewtest(xm)
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- assert_allclose(r[0][0], rm[0][0], rtol=2e-15)
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- assert_allclose(r[0][1], rm[0][1], rtol=1e-15)
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+ assert_allclose(r[0][0], rm[0][0], rtol=1e-14)
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+ assert_allclose(r[0][1], rm[0][1], rtol=1e-14)
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def test_normaltest(self):
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with np.errstate(over='raise'), suppress_warnings() as sup:
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53
SOURCES/fix_test_milp_timeout.patch
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53
SOURCES/fix_test_milp_timeout.patch
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@ -0,0 +1,53 @@
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From 9b068e5a68d9efd9c2403e9499b2c381b6c1d3a6 Mon Sep 17 00:00:00 2001
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From: Matt Haberland <mhaberla@calpoly.edu>
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Date: Fri, 21 Apr 2023 07:07:41 -0700
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Subject: [PATCH 1/2] MAINT: optimize: fix test_milp_timeout
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---
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scipy/optimize/tests/test_milp.py | 4 +---
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1 file changed, 1 insertion(+), 3 deletions(-)
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diff --git a/scipy/optimize/tests/test_milp.py b/scipy/optimize/tests/test_milp.py
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index 51996642..1f60fce3 100644
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--- a/scipy/optimize/tests/test_milp.py
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+++ b/scipy/optimize/tests/test_milp.py
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@@ -279,9 +279,7 @@ _msg_iter = "Iteration limit reached. (HiGHS Status 14:"
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@pytest.mark.skipif(np.intp(0).itemsize < 8,
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reason="Unhandled 32-bit GCC FP bug")
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-@pytest.mark.slow
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-@pytest.mark.timeout(360)
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-@pytest.mark.parametrize(["options", "msg"], [({"time_limit": 10}, _msg_time),
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+@pytest.mark.parametrize(["options", "msg"], [({"time_limit": 0.1}, _msg_time),
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({"node_limit": 1}, _msg_iter)])
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def test_milp_timeout_16545(options, msg):
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# Ensure solution is not thrown away if MILP solver times out
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--
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2.40.0
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From 024568a4f4292e7b22643f40ae61d33d273cf674 Mon Sep 17 00:00:00 2001
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From: Matt Haberland <mhaberla@calpoly.edu>
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Date: Sat, 22 Apr 2023 15:43:07 -0700
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Subject: [PATCH 2/2] Update scipy/optimize/tests/test_milp.py
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[skip ci]
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---
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scipy/optimize/tests/test_milp.py | 1 +
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1 file changed, 1 insertion(+)
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diff --git a/scipy/optimize/tests/test_milp.py b/scipy/optimize/tests/test_milp.py
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index 1f60fce3..42dae29a 100644
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--- a/scipy/optimize/tests/test_milp.py
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+++ b/scipy/optimize/tests/test_milp.py
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@@ -279,6 +279,7 @@ _msg_iter = "Iteration limit reached. (HiGHS Status 14:"
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@pytest.mark.skipif(np.intp(0).itemsize < 8,
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reason="Unhandled 32-bit GCC FP bug")
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+@pytest.mark.slow
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@pytest.mark.parametrize(["options", "msg"], [({"time_limit": 0.1}, _msg_time),
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({"node_limit": 1}, _msg_iter)])
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def test_milp_timeout_16545(options, msg):
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--
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2.40.0
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@ -21,8 +21,8 @@
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Summary: Scientific Tools for Python
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Name: python%{python3_pkgversion}-scipy
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Version: 1.10.0
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Release: 1%{?dist}
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Version: 1.10.1
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Release: 2%{?dist}
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# BSD -- whole package except:
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# Boost -- scipy/special/cephes/scipy_iv.c
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@ -31,10 +31,10 @@ License: BSD and Boost and Public Domain
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Url: http://www.scipy.org/scipylib/index.html
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Source0: https://github.com/scipy/scipy/releases/download/v%{version}/scipy-%{version}.tar.gz
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# Fix some test failures on 32 bits
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# https://github.com/scipy/scipy/pull/17859
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# https://github.com/scipy/scipy/pull/17931
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Patch0: fix-32bit-test-failures.patch
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# Fix test_milp_timeout failure
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# Resolved upstream: https://github.com/scipy/scipy/pull/18339
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Patch0: fix_test_milp_timeout.patch
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BuildRequires: fftw-devel, suitesparse-devel
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BuildRequires: %{blaslib}-devel
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@ -218,6 +218,12 @@ popd
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%{python3_sitearch}/*.egg-info
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%changelog
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* Wed May 10 2023 Charalampos Stratakis <cstratak@redhat.com> - 1.10.1-2
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- Fix test_milp_timeout failure
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* Tue May 02 2023 Ryan Erickson <rerickso@redhat.com> - 1.10.1-1
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- Update to 1.10.1
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* Sun Feb 19 2023 Charalampos Stratakis <cstratak@redhat.com> - 1.10.0-1
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- Update to 1.10.0
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