.fmf/version

@@ -0,0 +1 @@
+1

.gitignore

@@ -1 +1,45 @@
-SOURCES/scipy-1.3.1.tar.gz
+scipy-0.7.2.tar.gz
+/scipy-0.9.0.tar.gz
+/scipy-0.10.0.tar.gz
+/scipy-0.10.1.tar.gz
+/scipy-0.11.0rc2.tar.gz
+/scipy-0.11.0.tar.gz
+/scipy-0.12.0b1.tar.gz
+/scipy-0.12.0.tar.gz
+/scipy-0.13.0b1.tar.gz
+/scipy-0.13.0rc1.tar.gz
+/scipy-0.13.0.tar.gz
+/scipy-0.13.1.tar.gz
+/scipy-0.13.2.tar.gz
+/scipy-0.13.3.tar.gz
+/scipy-0.14.0b1.tar.gz
+/scipy-0.14.0.tar.gz
+/scipy-0.14.1.tar.gz
+/scipy-0.15.1.tar.gz
+/scipy-0.16.0.tar.gz
+/scipy-0.16.1.tar.gz
+/scipy-0.17.0.tar.gz
+/scipy-0.18.0.tar.xz
+/scipy-0.19.0.tar.xz
+/scipy-0.19.1.tar.xz
+/scipy-1.0.0.tar.xz
+/scipy-1.1.0.tar.gz
+/scipy-1.2.0.tar.gz
+/scipy-1.2.1.tar.gz
+/scipy-1.3.1.tar.gz
+/scipy-1.4.1.tar.gz
+/scipy-1.5.0.tar.gz
+/scipy-1.5.2.tar.gz
+/scipy-1.5.3.tar.gz
+/scipy-1.5.4.tar.gz
+/scipy-1.6.0.tar.gz
+/scipy-1.6.1.tar.gz
+/scipy-1.6.2.tar.gz
+/scipy-1.7.0.tar.gz
+/scipy-1.7.3.tar.gz
+/scipy-1.8.0.tar.gz
+/scipy-1.8.1.tar.gz
+/scipy-1.10.0.tar.gz
+/scipy-1.10.1.tar.gz
+/scipy-1.11.1.tar.gz
+/scipy-1.11.3.tar.gz

.scipy.metadata

@@ -1 +0,0 @@
-3c079c09ecb614d8056135edd1cc6da51d18df0a SOURCES/scipy-1.3.1.tar.gz

19443.patch

@@ -0,0 +1,28 @@
+From 28413806316049c09bb4b0182f652cce0ba82a50 Mon Sep 17 00:00:00 2001
+From: "Benjamin A. Beasley" <code@musicinmybrain.net>
+Date: Fri, 27 Oct 2023 16:47:37 -0400
+Subject: [PATCH] TST: Fix #19442 minimally
+
+Use a sorted version of the set REAL_DTYPES to parameterize
+test_b_orthonormalize.
+---
+ scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py | 6 +++---
+ 1 file changed, 3 insertions(+), 3 deletions(-)
+
+diff --git a/scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py b/scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py
+index c17d37051fca..fd6f166dc62d 100644
+--- a/scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py
++++ b/scipy/sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py
+@@ -101,9 +101,9 @@ def test_MikotaPair():
+ 
+ @pytest.mark.parametrize("n", [50])
+ @pytest.mark.parametrize("m", [1, 2, 10])
+-@pytest.mark.parametrize("Vdtype", REAL_DTYPES)
+-@pytest.mark.parametrize("Bdtype", REAL_DTYPES)
+-@pytest.mark.parametrize("BVdtype", REAL_DTYPES)
++@pytest.mark.parametrize("Vdtype", sorted(REAL_DTYPES, key=str))
++@pytest.mark.parametrize("Bdtype", sorted(REAL_DTYPES, key=str))
++@pytest.mark.parametrize("BVdtype", sorted(REAL_DTYPES, key=str))
+ def test_b_orthonormalize(n, m, Vdtype, Bdtype, BVdtype):
+     """Test B-orthonormalization by Cholesky with callable 'B'.
+     The function '_b_orthonormalize' is key in LOBPCG but may

SOURCES/acceptable_failure_rate.patch

@@ -1,28 +0,0 @@
-diff --git a/scipy/conftest.py b/scipy/conftest.py
-index e5fac23..1a971e8 100644
---- a/scipy/conftest.py
-+++ b/scipy/conftest.py
-@@ -3,6 +3,7 @@ from __future__ import division, absolute_import, print_function
- 
- import os
- import pytest
-+import _pytest
- import warnings
- 
- from distutils.version import LooseVersion
-@@ -37,3 +38,15 @@ def check_fpu_mode(request):
-         warnings.warn("FPU mode changed from {0:#x} to {1:#x} during "
-                       "the test".format(old_mode, new_mode),
-                       category=FPUModeChangeWarning, stacklevel=0)
-+
-+
-+ACCEPTABLE_FAILURE_RATE = int(os.environ.get('ACCEPTABLE_FAILURE_RATE', 0))
-+
-+
-+@pytest.hookimpl()
-+def pytest_sessionfinish(session, exitstatus):
-+    if exitstatus != _pytest.main.EXIT_TESTSFAILED:
-+        return
-+    failure_rate = (100.0 * session.testsfailed) / session.testscollected
-+    if failure_rate <= ACCEPTABLE_FAILURE_RATE:
-+        session.exitstatus = 0

SOURCES/ckdtree_bugfix.patch

@@ -1,140 +0,0 @@
-From d945dfa4063c5cd7169acd117c15f23ba68027ed Mon Sep 17 00:00:00 2001
-From: Pauli Virtanen <pav@iki.fi>
-Date: Wed, 31 Jul 2019 23:31:22 +0300
-Subject: [PATCH 1/2] BUG: spatial: use c++11 construct for getting start of
- vector
-
-gcc 9.1.1 on Fedora throws asserts and crashes at runtime on
-`&x.front()` when `x` is empty, so use a different construct for getting
-the beginning of the data block.
----
- scipy/spatial/ckdtree.pyx | 18 +++++++++---------
- 1 file changed, 9 insertions(+), 9 deletions(-)
-
-diff --git a/scipy/spatial/ckdtree.pyx b/scipy/spatial/ckdtree.pyx
-index e2eea8c9097..884d49e1d34 100644
---- a/scipy/spatial/ckdtree.pyx
-+++ b/scipy/spatial/ckdtree.pyx
-@@ -190,7 +190,7 @@ cdef class coo_entries:
-         res_dtype = np.dtype(_dtype, align = True)
-         n = <np.intp_t> self.buf.size()
-         if NPY_LIKELY(n > 0):
--            pr = &self.buf.front()
-+            pr = self.buf.data()
-             uintptr = <np.uintp_t> (<void*> pr)
-             dtype = np.dtype(np.uint8)
-             self.__array_interface__ = dict(
-@@ -213,7 +213,7 @@ cdef class coo_entries:
-             dict res_dict
-         n = <np.intp_t> self.buf.size()
-         if NPY_LIKELY(n > 0):
--            pr = &self.buf.front()
-+            pr = self.buf.data()
-             res_dict = dict()
-             for k in range(n):
-                 i = pr[k].i
-@@ -263,7 +263,7 @@ cdef class ordered_pairs:
-             np.intp_t n
-         n = <np.intp_t> self.buf.size()
-         if NPY_LIKELY(n > 0):
--            pr = &self.buf.front()
-+            pr = self.buf.data()
-             uintptr = <np.uintp_t> (<void*> pr)
-             dtype = np.dtype(np.intp)
-             self.__array_interface__ = dict(
-@@ -284,7 +284,7 @@ cdef class ordered_pairs:
-             np.intp_t i, n
-             set results
-         results = set()
--        pair = &self.buf.front()
-+        pair = self.buf.data()
-         n = <np.intp_t> self.buf.size()
-         if sizeof(long) < sizeof(np.intp_t):
-             # Needed for Python 2.x on Win64
-@@ -593,7 +593,7 @@ cdef class cKDTree:
-         cself = self.cself
-         # finalize the tree points, this calls _post_init_traverse
- 
--        cself.ctree = &cself.tree_buffer.front()
-+        cself.ctree = cself.tree_buffer.data()
- 
-         # set the size attribute after tree_buffer is built
-         cself.size = cself.tree_buffer.size()
-@@ -971,7 +971,7 @@ cdef class cKDTree:
-                     m = <np.intp_t> (vvres[i].size())
-                     tmp = m * [None]
- 
--                    cur = &vvres[i].front()
-+                    cur = vvres[i].data()
-                     for j in range(m):
-                         tmp[j] = cur[0]
-                         cur += 1
-@@ -1067,7 +1067,7 @@ cdef class cKDTree:
-                     tmp = m * [None]
-                     with nogil:
-                         sort(vvres[i].begin(), vvres[i].end())
--                    cur = &vvres[i].front()
-+                    cur = vvres[i].data()
-                     for j in range(m):
-                         tmp[j] = cur[0]
-                         cur += 1
-@@ -1492,7 +1492,7 @@ cdef class cKDTree:
-         cdef ckdtree * cself = self.cself
-         size = cself.tree_buffer.size() * sizeof(ckdtreenode)
- 
--        cdef np.ndarray tree = np.asarray(<char[:size]> <char*> &cself.tree_buffer.front())
-+        cdef np.ndarray tree = np.asarray(<char[:size]> <char*> cself.tree_buffer.data())
- 
-         state = (tree.copy(), self.data.copy(), self.n, self.m, self.leafsize,
-                       self.maxes, self.mins, self.indices.copy(),
-@@ -1511,7 +1511,7 @@ cdef class cKDTree:
-         cself.tree_buffer = new vector[ckdtreenode]()
-         cself.tree_buffer.resize(tree.size // sizeof(ckdtreenode))
- 
--        mytree = np.asarray(<char[:tree.size]> <char*> &cself.tree_buffer.front())
-+        mytree = np.asarray(<char[:tree.size]> <char*> cself.tree_buffer.data())
- 
-         # set raw pointers
-         self._pre_init()
-
-From ad0f91438f49bfe277e32d2689aefeb0c11c789f Mon Sep 17 00:00:00 2001
-From: Pauli Virtanen <pav@iki.fi>
-Date: Wed, 31 Jul 2019 23:41:40 +0300
-Subject: [PATCH 2/2] BLD: spatial: set c++ std flags for ckdtree
-
----
- scipy/spatial/setup.py | 11 ++++++++++-
- 1 file changed, 10 insertions(+), 1 deletion(-)
-
-diff --git a/scipy/spatial/setup.py b/scipy/spatial/setup.py
-index d7e334876df..19d78593c5e 100644
---- a/scipy/spatial/setup.py
-+++ b/scipy/spatial/setup.py
-@@ -4,6 +4,13 @@
- import glob
- 
- 
-+def pre_build_hook(build_ext, ext):
-+    from scipy._build_utils.compiler_helper import get_cxx_std_flag
-+    std_flag = get_cxx_std_flag(build_ext._cxx_compiler)
-+    if std_flag is not None:
-+        ext.extra_compile_args.append(std_flag)
-+
-+
- def configuration(parent_package='', top_path=None):
-     from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
-     from numpy.distutils.misc_util import get_info as get_misc_info
-@@ -55,10 +62,12 @@ def configuration(parent_package='', top_path=None):
-     ckdtree_headers = [join('ckdtree', 'src', x) for x in ckdtree_headers]
- 
-     ckdtree_dep = ['ckdtree.cxx'] + ckdtree_headers + ckdtree_src
--    config.add_extension('ckdtree',
-+    ext = config.add_extension('ckdtree',
-                          sources=['ckdtree.cxx'] + ckdtree_src,
-                          depends=ckdtree_dep,
-                          include_dirs=inc_dirs + [join('ckdtree', 'src')])
-+    ext._pre_build_hook = pre_build_hook
-+
-     # _distance_wrap
-     config.add_extension('_distance_wrap',
-                          sources=[join('src', 'distance_wrap.c')],

SOURCES/numpy-deprecation-warnings.patch

@@ -1,589 +0,0 @@
-diff -ru scipy-1.2.1/scipy/odr/__odrpack.c scipy-1.2.1_patched/scipy/odr/__odrpack.c
---- scipy-1.2.1/scipy/odr/__odrpack.c	2019-01-28 04:57:51.000000000 +0100
-+++ scipy-1.2.1_patched/scipy/odr/__odrpack.c	2019-06-06 16:11:32.947892754 +0200
-@@ -9,6 +9,8 @@
-  *
-  */
- 
-+#define PY_SSIZE_T_CLEAN
-+#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
- #include "odrpack.h"
- 
- 
-@@ -44,7 +46,7 @@
-                   double *fjacb, double *fjacd, int *istop)
- {
-   PyObject *arg01, *arglist;
--  PyObject *result;
-+  PyObject *result = NULL;
-   PyArrayObject *result_array = NULL;
-   PyArrayObject *pyXplusD;
-   void *beta_dst;
-@@ -57,14 +59,14 @@
-       dim2[0] = *m;
-       dim2[1] = *n;
-       pyXplusD = (PyArrayObject *) PyArray_SimpleNew(2, dim2, NPY_DOUBLE);
--      memcpy(pyXplusD->data, (void *)xplusd, (*m) * (*n) * sizeof(double));
-+      memcpy(PyArray_DATA(pyXplusD), (void *)xplusd, (*m) * (*n) * sizeof(double));
-     }
-   else
-     {
-       npy_intp dim1[1];
-       dim1[0] = *n;
-       pyXplusD = (PyArrayObject *) PyArray_SimpleNew(1, dim1, NPY_DOUBLE);
--      memcpy(pyXplusD->data, (void *)xplusd, (*n) * sizeof(double));
-+      memcpy(PyArray_DATA(pyXplusD), (void *)xplusd, (*n) * sizeof(double));
-     }
- 
-   PyTuple_SetItem(arg01, 0, odr_global.pyBeta);
-@@ -84,7 +86,7 @@
-   Py_DECREF(arg01);
-   *istop = 0;
- 
--  beta_dst = ((PyArrayObject *) (odr_global.pyBeta))->data;
-+  beta_dst = (PyArray_DATA((PyArrayObject *) odr_global.pyBeta));
-   if (beta != beta_dst) {
-       memcpy(beta_dst, (void *)beta, (*np) * sizeof(double));
-   }
-@@ -121,7 +123,7 @@
-                  "Result from function call is not a proper array of floats.");
-         }
- 
--      memcpy((void *)f, result_array->data, (*n) * (*nq) * sizeof(double));
-+      memcpy((void *)f, PyArray_DATA(result_array), (*n) * (*nq) * sizeof(double));
-       Py_DECREF(result_array);
-     }
- 
-@@ -161,7 +163,7 @@
-         {
-           /* result_array should be rank-3 */
- 
--          if (result_array->nd != 3)
-+          if (PyArray_NDIM(result_array) != 3)
-             {
-               Py_DECREF(result_array);
-               PYERR2(odr_error, "Beta Jacobian is not rank-3");
-@@ -171,14 +173,14 @@
-         {
-           /* result_array should be rank-2 */
- 
--          if (result_array->nd != 2)
-+          if (PyArray_NDIM(result_array) != 2)
-             {
-               Py_DECREF(result_array);
-               PYERR2(odr_error, "Beta Jacobian is not rank-2");
-             }
-         }
- 
--      memcpy((void *)fjacb, result_array->data,
-+      memcpy((void *)fjacb, PyArray_DATA(result_array),
-              (*n) * (*nq) * (*np) * sizeof(double));
-       Py_DECREF(result_array);
- 
-@@ -220,7 +222,7 @@
-         {
-           /* result_array should be rank-3 */
- 
--          if (result_array->nd != 3)
-+          if (PyArray_NDIM(result_array) != 3)
-             {
-               Py_DECREF(result_array);
-               PYERR2(odr_error, "xplusd Jacobian is not rank-3");
-@@ -230,7 +232,7 @@
-         {
-           /* result_array should be rank-2 */
- 
--          if (result_array->nd != 2)
-+          if (PyArray_NDIM(result_array) != 2)
-             {
-               Py_DECREF(result_array);
-               PYERR2(odr_error, "xplusd Jacobian is not rank-2");
-@@ -240,14 +242,14 @@
-         {
-           /* result_array should be rank-1 */
- 
--          if (result_array->nd != 1)
-+          if (PyArray_NDIM(result_array) != 1)
-             {
-               Py_DECREF(result_array);
-               PYERR2(odr_error, "xplusd Jacobian is not rank-1");
-             }
-         }
- 
--      memcpy((void *)fjacd, result_array->data,
-+      memcpy((void *)fjacd, PyArray_DATA(result_array),
-              (*n) * (*nq) * (*m) * sizeof(double));
-       Py_DECREF(result_array);
-     }
-@@ -291,7 +293,7 @@
-       return NULL;
-   }
- 
--  lwkmn = work->dimensions[0];
-+  lwkmn = PyArray_DIMS(work)[0];
- 
-   F_FUNC(dwinf,DWINF)(&n, &m, &np, &nq, &ldwe, &ld2we, &isodr,
-         &delta, &eps, &xplus, &fn, &sd, &vcv, &rvar, &wss, &wssde,
-@@ -352,15 +354,15 @@
-   wrk6--;
-   wrk7--;
- 
--  dim1[0] = beta->dimensions[0];
-+  dim1[0] = PyArray_DIMS(beta)[0];
-   sd_beta = (PyArrayObject *) PyArray_SimpleNew(1, dim1, NPY_DOUBLE);
--  dim2[0] = beta->dimensions[0];
--  dim2[1] = beta->dimensions[0];
-+  dim2[0] = PyArray_DIMS(beta)[0];
-+  dim2[1] = PyArray_DIMS(beta)[0];
-   cov_beta = (PyArrayObject *) PyArray_SimpleNew(2, dim2, NPY_DOUBLE);
- 
--  memcpy(sd_beta->data, (void *)((double *)(work->data) + sd),
-+  memcpy(PyArray_DATA(sd_beta), (void *)((double *)(PyArray_DATA(work)) + sd),
-          np * sizeof(double));
--  memcpy(cov_beta->data, (void *)((double *)(work->data) + vcv),
-+  memcpy(PyArray_DATA(cov_beta), (void *)((double *)(PyArray_DATA(work)) + vcv),
-          np * np * sizeof(double));
- 
-   if (!full_output)
-@@ -427,21 +429,21 @@
-           fnA = (PyArrayObject *) PyArray_SimpleNew(2, dim2, NPY_DOUBLE);
-         }
- 
--      memcpy(deltaA->data, (void *)((double *)(work->data) + delta),
-+      memcpy(PyArray_DATA(deltaA), (void *)((double *)(PyArray_DATA(work)) + delta),
-              m * n * sizeof(double));
--      memcpy(epsA->data, (void *)((double *)(work->data) + eps),
-+      memcpy(PyArray_DATA(epsA), (void *)((double *)(PyArray_DATA(work)) + eps),
-              nq * n * sizeof(double));
--      memcpy(xplusA->data, (void *)((double *)(work->data) + xplus),
-+      memcpy(PyArray_DATA(xplusA), (void *)((double *)(PyArray_DATA(work)) + xplus),
-              m * n * sizeof(double));
--      memcpy(fnA->data, (void *)((double *)(work->data) + fn),
-+      memcpy(PyArray_DATA(fnA), (void *)((double *)(PyArray_DATA(work)) + fn),
-              nq * n * sizeof(double));
- 
--      res_var = *((double *)(work->data) + rvar);
--      sum_square = *((double *)(work->data) + wss);
--      sum_square_delta = *((double *)(work->data) + wssde);
--      sum_square_eps = *((double *)(work->data) + wssep);
--      inv_condnum = *((double *)(work->data) + rcond);
--      rel_error = *((double *)(work->data) + eta);
-+      res_var = *((double *)(PyArray_DATA(work)) + rvar);
-+      sum_square = *((double *)(PyArray_DATA(work)) + wss);
-+      sum_square_delta = *((double *)(PyArray_DATA(work)) + wssde);
-+      sum_square_eps = *((double *)(PyArray_DATA(work)) + wssep);
-+      inv_condnum = *((double *)(PyArray_DATA(work)) + rcond);
-+      rel_error = *((double *)(PyArray_DATA(work)) + eta);
- 
-       retobj =
-         Py_BuildValue
-@@ -623,7 +625,7 @@
-           PYERR(PyExc_ValueError,
-                 "y could not be made into a suitable array");
-         }
--      n = y->dimensions[y->nd - 1];     /* pick the last dimension */
-+      n = PyArray_DIMS(y)[PyArray_NDIM(y) - 1];     /* pick the last dimension */
-       if ((x =
-            (PyArrayObject *) PyArray_CopyFromObject(px, NPY_DOUBLE, 1,
-                                                     2)) == NULL)
-@@ -631,18 +633,18 @@
-           PYERR(PyExc_ValueError,
-                 "x could not be made into a suitable array");
-         }
--      if (n != x->dimensions[x->nd - 1])
-+      if (n != PyArray_DIMS(x)[PyArray_NDIM(x) - 1])
-         {
-           PYERR(PyExc_ValueError,
-                 "x and y don't have matching numbers of observations");
-         }
--      if (y->nd == 1)
-+      if (PyArray_NDIM(y) == 1)
-         {
-           nq = 1;
-         }
-       else
-         {
--          nq = y->dimensions[0];
-+          nq = PyArray_DIMS(y)[0];
-         }
- 
-       ldx = ldy = n;
-@@ -664,17 +666,17 @@
-                 "x could not be made into a suitable array");
-         }
- 
--      n = x->dimensions[x->nd - 1];
-+      n = PyArray_DIMS(x)[PyArray_NDIM(x) - 1];
-       ldx = n;
-     }
- 
--  if (x->nd == 1)
-+  if (PyArray_NDIM(x) == 1)
-     {
-       m = 1;
-     }
-   else
-     {
--      m = x->dimensions[0];
-+      m = PyArray_DIMS(x)[0];
-     }                           /* x, y */
- 
-   if ((beta =
-@@ -684,14 +686,14 @@
-       PYERR(PyExc_ValueError,
-             "initbeta could not be made into a suitable array");
-     }
--  np = beta->dimensions[0];
-+  np = PyArray_DIMS(beta)[0];
- 
-   if (pwe == NULL)
-     {
-       ldwe = ld2we = 1;
-       dim1[0] = n;
-       we = (PyArrayObject *) PyArray_SimpleNew(1, dim1, NPY_DOUBLE);
--      ((double *)(we->data))[0] = -1.0;
-+      ((double *)(PyArray_DATA(we)))[0] = -1.0;
-     }
-   else if (PyNumber_Check(pwe) && !PyArray_Check(pwe))
-     {
-@@ -711,11 +713,11 @@
-       we = (PyArrayObject *) PyArray_SimpleNew(3, dim3, NPY_DOUBLE);
-       if (implicit)
-         {
--          ((double *)(we->data))[0] = val;
-+          ((double *)(PyArray_DATA(we)))[0] = val;
-         }
-       else
-         {
--          ((double *)(we->data))[0] = -val;
-+          ((double *)(PyArray_DATA(we)))[0] = -val;
-         }
-       ldwe = ld2we = 1;
-     }
-@@ -730,29 +732,29 @@
-           PYERR(PyExc_ValueError, "could not convert we to a suitable array");
-         }
- 
--      if (we->nd == 1 && nq == 1)
-+      if (PyArray_NDIM(we) == 1 && nq == 1)
-         {
- 
-           ldwe = n;
-           ld2we = 1;
-         }
--      else if (we->nd == 1 && we->dimensions[0] == nq)
-+      else if (PyArray_NDIM(we) == 1 && PyArray_DIMS(we)[0] == nq)
-         {
-           /* we is a rank-1 array with diagonal weightings to be broadcast 
-            * to all observations */
-           ldwe = 1;
-           ld2we = 1;
-         }
--      else if (we->nd == 3 && we->dimensions[0] == nq
--               && we->dimensions[1] == nq && we->dimensions[2] == 1)
-+      else if (PyArray_NDIM(we) == 3 && PyArray_DIMS(we)[0] == nq
-+               && PyArray_DIMS(we)[1] == nq && PyArray_DIMS(we)[2] == 1)
-         {
-           /* we is a rank-3 array with the covariant weightings 
-              to be broadcast to all observations */
-           ldwe = 1;
-           ld2we = nq;
-         }
--      else if (we->nd == 2 && we->dimensions[0] == nq
--               && we->dimensions[1] == nq)
-+      else if (PyArray_NDIM(we) == 2 && PyArray_DIMS(we)[0] == nq
-+               && PyArray_DIMS(we)[1] == nq)
-         {
-           /* we is a rank-2 array with the full covariant weightings 
-              to be broadcast to all observations */
-@@ -760,16 +762,16 @@
-           ld2we = nq;
-         }
- 
--      else if (we->nd == 2 && we->dimensions[0] == nq
--               && we->dimensions[1] == n)
-+      else if (PyArray_NDIM(we) == 2 && PyArray_DIMS(we)[0] == nq
-+               && PyArray_DIMS(we)[1] == n)
-         {
-           /* we is a rank-2 array with the diagonal elements of the 
-              covariant weightings for each observation */
-           ldwe = n;
-           ld2we = 1;
-         }
--      else if (we->nd == 3 && we->dimensions[0] == nq
--               && we->dimensions[1] == nq && we->dimensions[2] == n)
-+      else if (PyArray_NDIM(we) == 3 && PyArray_DIMS(we)[0] == nq
-+               && PyArray_DIMS(we)[1] == nq && PyArray_DIMS(we)[2] == n)
-         {
-           /* we is the full specification of the covariant weights
-              for each observation */
-@@ -788,7 +790,7 @@
- 
-       dim1[0] = m;
-       wd = (PyArrayObject *) PyArray_SimpleNew(1, dim1, NPY_DOUBLE);
--      ((double *)(wd->data))[0] = -1.0;
-+      ((double *)(PyArray_DATA(wd)))[0] = -1.0;
-     }
-   else if (PyNumber_Check(pwd) && !PyArray_Check(pwd))
-     {
-@@ -806,7 +808,7 @@
-       dim3[1] = 1;
-       dim3[2] = m;
-       wd = (PyArrayObject *) PyArray_SimpleNew(3, dim3, NPY_DOUBLE);
--      ((double *)(wd->data))[0] = -val;
-+      ((double *)(PyArray_DATA(wd)))[0] = -val;
-       ldwd = ld2wd = 1;
-     }
-   else if (PySequence_Check(pwd))
-@@ -820,12 +822,12 @@
-           PYERR(PyExc_ValueError, "could not convert wd to a suitable array");
-         }
- 
--      if (wd->nd == 1 && m == 1)
-+      if (PyArray_NDIM(wd) == 1 && m == 1)
-         {
-           ldwd = n;
-           ld2wd = 1;
-         }
--      else if (wd->nd == 1 && wd->dimensions[0] == m)
-+      else if (PyArray_NDIM(wd) == 1 && PyArray_DIMS(wd)[0] == m)
-         {
-           /* wd is a rank-1 array with diagonal weightings to be broadcast 
-            * to all observations */
-@@ -833,16 +835,16 @@
-           ld2wd = 1;
-         }
- 
--      else if (wd->nd == 3 && wd->dimensions[0] == m
--               && wd->dimensions[1] == m && wd->dimensions[2] == 1)
-+      else if (PyArray_NDIM(wd) == 3 && PyArray_DIMS(wd)[0] == m
-+               && PyArray_DIMS(wd)[1] == m && PyArray_DIMS(wd)[2] == 1)
-         {
-           /* wd is a rank-3 array with the covariant wdightings 
-              to be broadcast to all observations */
-           ldwd = 1;
-           ld2wd = m;
-         }
--      else if (wd->nd == 2 && wd->dimensions[0] == m
--               && wd->dimensions[1] == m)
-+      else if (PyArray_NDIM(wd) == 2 && PyArray_DIMS(wd)[0] == m
-+               && PyArray_DIMS(wd)[1] == m)
-         {
-           /* wd is a rank-2 array with the full covariant weightings 
-              to be broadcast to all observations */
-@@ -850,16 +852,16 @@
-           ld2wd = m;
-         }
- 
--      else if (wd->nd == 2 && wd->dimensions[0] == m
--               && wd->dimensions[1] == n)
-+      else if (PyArray_NDIM(wd) == 2 && PyArray_DIMS(wd)[0] == m
-+               && PyArray_DIMS(wd)[1] == n)
-         {
-           /* wd is a rank-2 array with the diagonal elements of the 
-              covariant weightings for each observation */
-           ldwd = n;
-           ld2wd = 1;
-         }
--      else if (wd->nd == 3 && wd->dimensions[0] == m
--               && wd->dimensions[1] == m && wd->dimensions[2] == n)
-+      else if (PyArray_NDIM(wd) == 3 && PyArray_DIMS(wd)[0] == m
-+               && PyArray_DIMS(wd)[1] == m && PyArray_DIMS(wd)[2] == n)
-         {
-           /* wd is the full specification of the covariant weights
-              for each observation */
-@@ -878,7 +880,7 @@
-     {
-       dim1[0] = np;
-       ifixb = (PyArrayObject *) PyArray_SimpleNew(1, dim1, NPY_INT);
--      *(int *)(ifixb->data) = -1;      /* set first element negative */
-+      *(int *)(PyArray_DATA(ifixb)) = -1;      /* set first element negative */
-     }
-   else
-     {
-@@ -892,7 +894,7 @@
-                 "could not convert ifixb to a suitable array");
-         }
- 
--      if (ifixb->dimensions[0] != np)
-+      if (PyArray_DIMS(ifixb)[0] != np)
-         {
-           PYERR(PyExc_ValueError,
-                 "could not convert ifixb to a suitable array");
-@@ -904,7 +906,7 @@
-       dim2[0] = m;
-       dim2[1] = 1;
-       ifixx = (PyArrayObject *) PyArray_SimpleNew(2, dim2, NPY_INT);
--      *(int *)(ifixx->data) = -1;      /* set first element negative */
-+      *(int *)(PyArray_DATA(ifixx)) = -1;      /* set first element negative */
-       ldifx = 1;
-     }
-   else
-@@ -919,16 +921,16 @@
-                 "could not convert ifixx to a suitable array");
-         }
- 
--      if (ifixx->nd == 1 && ifixx->dimensions[0] == m)
-+      if (PyArray_NDIM(ifixx) == 1 && PyArray_DIMS(ifixx)[0] == m)
-         {
-           ldifx = 1;
-         }
--      else if (ifixx->nd == 1 && ifixx->dimensions[0] == n && m == 1)
-+      else if (PyArray_NDIM(ifixx) == 1 && PyArray_DIMS(ifixx)[0] == n && m == 1)
-         {
-           ldifx = n;
-         }
--      else if (ifixx->nd == 2 && ifixx->dimensions[0] == m
--               && ifixx->dimensions[1] == n)
-+      else if (PyArray_NDIM(ifixx) == 2 && PyArray_DIMS(ifixx)[0] == m
-+               && PyArray_DIMS(ifixx)[1] == n)
-         {
-           ldifx = n;
-         }
-@@ -957,14 +959,14 @@
-     {
-       dim1[0] = np;
-       stpb = (PyArrayObject *) PyArray_SimpleNew(1, dim1, NPY_DOUBLE);
--      *(double *)(stpb->data) = 0.0;
-+      *(double *)(PyArray_DATA(stpb)) = 0.0;
-     }
-   else                          /* pstpb is a sequence */
-     {
-       if ((stpb =
-            (PyArrayObject *) PyArray_CopyFromObject(pstpb, NPY_DOUBLE, 1,
-                                                     1)) == NULL
--          || stpb->dimensions[0] != np)
-+          || PyArray_DIMS(stpb)[0] != np)
-         {
-           PYERR(PyExc_ValueError,
-                 "could not convert stpb to a suitable array");
-@@ -976,7 +978,7 @@
-       dim2[0] = 1;
-       dim2[1] = m;
-       stpd = (PyArrayObject *) PyArray_SimpleNew(2, dim2, NPY_DOUBLE);
--      *(double *)(stpd->data) = 0.0;
-+      *(double *)(PyArray_DATA(stpd)) = 0.0;
-       ldstpd = 1;
-     }
-   else
-@@ -989,16 +991,16 @@
-                 "could not convert stpb to a suitable array");
-         }
- 
--      if (stpd->nd == 1 && stpd->dimensions[0] == m)
-+      if (PyArray_NDIM(stpd) == 1 && PyArray_DIMS(stpd)[0] == m)
-         {
-           ldstpd = 1;
-         }
--      else if (stpd->nd == 1 && stpd->dimensions[0] == n && m == 1)
-+      else if (PyArray_NDIM(stpd) == 1 && PyArray_DIMS(stpd)[0] == n && m == 1)
-         {
-           ldstpd = n;
-         }
--      else if (stpd->nd == 2 && stpd->dimensions[0] == n &&
--               stpd->dimensions[1] == m)
-+      else if (PyArray_NDIM(stpd) == 2 && PyArray_DIMS(stpd)[0] == n &&
-+               PyArray_DIMS(stpd)[1] == m)
-         {
-           ldstpd = n;
-         }
-@@ -1008,14 +1010,14 @@
-     {
-       dim1[0] = np;
-       sclb = (PyArrayObject *) PyArray_SimpleNew(1, dim1, NPY_DOUBLE);
--      *(double *)(sclb->data) = 0.0;
-+      *(double *)(PyArray_DATA(sclb)) = 0.0;
-     }
-   else                          /* psclb is a sequence */
-     {
-       if ((sclb =
-            (PyArrayObject *) PyArray_CopyFromObject(psclb, NPY_DOUBLE, 1,
-                                                     1)) == NULL
--          || sclb->dimensions[0] != np)
-+          || PyArray_DIMS(sclb)[0] != np)
-         {
-           PYERR(PyExc_ValueError,
-                 "could not convert sclb to a suitable array");
-@@ -1027,7 +1029,7 @@
-       dim2[0] = 1;
-       dim2[1] = n;
-       scld = (PyArrayObject *) PyArray_SimpleNew(2, dim2, NPY_DOUBLE);
--      *(double *)(scld->data) = 0.0;
-+      *(double *)(PyArray_DATA(scld)) = 0.0;
-       ldscld = 1;
-     }
-   else
-@@ -1040,16 +1042,16 @@
-                 "could not convert stpb to a suitable array");
-         }
- 
--      if (scld->nd == 1 && scld->dimensions[0] == m)
-+      if (PyArray_NDIM(scld) == 1 && PyArray_DIMS(scld)[0] == m)
-         {
-           ldscld = 1;
-         }
--      else if (scld->nd == 1 && scld->dimensions[0] == n && m == 1)
-+      else if (PyArray_NDIM(scld) == 1 && PyArray_DIMS(scld)[0] == n && m == 1)
-         {
-           ldscld = n;
-         }
--      else if (scld->nd == 2 && scld->dimensions[0] == n &&
--               scld->dimensions[1] == m)
-+      else if (PyArray_NDIM(scld) == 2 && PyArray_DIMS(scld)[0] == n &&
-+               PyArray_DIMS(scld)[1] == m)
-         {
-           ldscld = n;
-         }
-@@ -1110,9 +1112,9 @@
-           PYERR(PyExc_ValueError,
-                 "could not convert work to a suitable array");
-         }
--      if (work->dimensions[0] < lwork)
-+      if (PyArray_DIMS(work)[0] < lwork)
-         {
--            printf("%d %d\n", work->dimensions[0], lwork);
-+            printf("%ld %d\n", PyArray_DIMS(work)[0], lwork);
-           PYERR(PyExc_ValueError, "work is too small");
-         }
-     }
-@@ -1133,7 +1135,7 @@
-                 "could not convert iwork to a suitable array");
-         }
- 
--      if (iwork->dimensions[0] < liwork)
-+      if (PyArray_DIMS(iwork)[0] < liwork)
-         {
-           PYERR(PyExc_ValueError, "iwork is too small");
-         }
-@@ -1170,19 +1172,18 @@
-   Py_INCREF(beta);
-   odr_global.extra_args = extra_args;
-   Py_XINCREF(extra_args);
--
--  /* now call DODRC */
--  F_FUNC(dodrc,DODRC)(fcn_callback, &n, &m, &np, &nq, (double *)(beta->data),
--        (double *)(y->data), &ldy, (double *)(x->data), &ldx,
--        (double *)(we->data), &ldwe, &ld2we,
--        (double *)(wd->data), &ldwd, &ld2wd,
--        (int *)(ifixb->data), (int *)(ifixx->data), &ldifx,
--        &job, &ndigit, &taufac, &sstol, &partol, &maxit,
--        &iprint, &lunerr, &lunrpt,
--        (double *)(stpb->data), (double *)(stpd->data), &ldstpd,
--        (double *)(sclb->data), (double *)(scld->data), &ldscld,
--        (double *)(work->data), &lwork, (int *)(iwork->data), &liwork,
--        &info);
-+   /* now call DODRC */
-+   F_FUNC(dodrc,DODRC)(fcn_callback, &n, &m, &np, &nq, (double *)(PyArray_DATA(beta)),
-+         (double *)(PyArray_DATA(y)), &ldy, (double *)(PyArray_DATA(x)), &ldx,
-+         (double *)(PyArray_DATA(we)), &ldwe, &ld2we,
-+         (double *)(PyArray_DATA(wd)), &ldwd, &ld2wd,
-+         (int *)(PyArray_DATA(ifixb)), (int *)(PyArray_DATA(ifixx)), &ldifx,
-+         &job, &ndigit, &taufac, &sstol, &partol, &maxit,
-+         &iprint, &lunerr, &lunrpt,
-+         (double *)(PyArray_DATA(stpb)), (double *)(PyArray_DATA(stpd)), &ldstpd,
-+         (double *)(PyArray_DATA(sclb)), (double *)(PyArray_DATA(scld)), &ldscld,
-+         (double *)(PyArray_DATA(work)), &lwork, (int *)(PyArray_DATA(iwork)), &liwork,
-+         &info);
- 
-   result = gen_output(n, m, np, nq, ldwe, ld2we,
-                       beta, work, iwork, isodr, info, full_output);

gating.yaml

@@ -0,0 +1,7 @@
+--- !Policy
+
+product_versions:
+  - rhel-10
+decision_context: osci_compose_gate
+rules:
+  - !PassingTestCaseRule {test_case_name: osci.brew-build.tier0.functional}

plans/tier0.fmf

@@ -0,0 +1,11 @@
+discover:
+  - name: Smoke-tests
+    how: shell
+    tests:
+    - name: python-import-test
+      test: python3 -c 'import scipy'
+      require:
+      - python3-scipy
+      duration: 1m
+execute:
+  how: tmt

rpminspect.yaml

@@ -0,0 +1,3 @@
+annocheck:
+    extra_opts:
+        - hardened: --skip-fortify --skip-lto --skip-implicit-values

scipy.spec

@@ -1,69 +1,95 @@
 # without means enabled
 %bcond_with doc
 
-%bcond_with tests
+# Pythran is an optional build dependency.
+# When used, it makes some modules faster,
+# but it is usually not available soon enough for new major Python versions.
+%if 0%{?rhel}
+%bcond_with pythran
+%bcond_with pooch
+%else
+%bcond_without pythran
+%bcond_without pooch
+%endif
+
+# The code is not safe to build with LTO
+%global _lto_cflags %{nil}
+
+%ifarch %{ix86}
+# On i686, there is a confusion whether Fortran INTEGER should be
+# translated as int or long.
+# <https://github.com/scipy/scipy/issues/19993>
+%global build_type_safety_c 2
+%endif
 
 # Set to pre-release version suffix if building pre-release, else %%{nil}
 %global rcver %{nil}
 
+%if 0%{?fedora} >= 33 || 0%{?rhel} >= 9
+%global blaslib flexiblas
+%global blasvar %{nil}
+%else
+%global blaslib openblas
+%global blasvar p
+%endif
+
 Summary:    Scientific Tools for Python
 Name:       scipy
-Version:    1.3.1
+Version:    1.11.3
-Release:    5%{?dist}
+Release:    17%{?dist}
 
-# BSD -- whole package except:
+# BSD-3-Clause -- whole package except:
-# Boost -- scipy/special/cephes/scipy_iv.c
+# BSD-2-Clause -- scipy/_lib/_pep440.py
-# Public Domain -- scipy/odr/__odrpack.c
+#                 scipy/_lib/decorator.py
-License:    BSD and Boost and Public Domain
+#                 scipy/optimize/lbfgsb_src
+#                 scipy/special/_ellip_harm.pxd
+# MIT -- scipy/cluster/_optimal_leaf_ordering.pyx
+#        scipy/io/_idl.py
+#        scipy/linalg/_basic.py (in part)
+#        scipy/optimize/_highs
+#        scipy/optimize/_lbfgsb_py.py
+#        scipy/optimize/_tnc.py
+#        scipy/optimize/_trlib
+#        scipy/optimize/tnc
+#        scipy/special/Faddeeva.{cc,hh}
+# BSL-1.0 -- scipy/_lib/boost_math
+#            scipy/special/cephes
+# Boehm-GC -- scipy/sparse/linalg/_dsolve/SuperLU
+# Qhull -- scipy/spatial/qhull_src
+# LicenseRef-Fedora-Public-Domain -- scipy/odr/__odrpack.c
+License:    BSD-3-Clause AND BSD-2-Clause AND MIT AND BSL-1.0 AND Boehm-GC AND Qhull AND LicenseRef-Fedora-Public-Domain
 Url:        http://www.scipy.org/scipylib/index.html
 Source0:    https://github.com/scipy/scipy/releases/download/v%{version}/scipy-%{version}.tar.gz
 
-# Previously we ignored the tests results, because they don't always pass
+# TST: Fix #19442 minimally
-# Instead of ignoring the results entirely, we allow certain failure rate
+# https://github.com/scipy/scipy/pull/19443
-# https://stackoverflow.com/a/47731333/1839451
+#
-Patch0:     acceptable_failure_rate.patch
+# Fixes:
+#
+# BUG: Error collecting tests due to inconsistent parameterization order in
+# test_b_orthonormalize
+# https://github.com/scipy/scipy/issues/19442
+Patch:          https://github.com/scipy/scipy/pull/19443.patch
 
-# The C API of PyArrayObject has changed in Python 3.8 and the
+BuildRequires: %{blaslib}-devel
-# structure fields accessed in __odrpack.c are now deprecated.
+BuildRequires: gcc-gfortran, gcc-c++
-Patch1:     numpy-deprecation-warnings.patch
 
-# Bugfix of cKDTree
+BuildRequires:  pybind11-devel
-# PR: https://github.com/scipy/scipy/pull/10567
+BuildRequires:  python3-devel, python3-numpy-f2py
-# Issue: https://github.com/scipy/scipy/issues/11021
-Patch2:     ckdtree_bugfix.patch
 
-# Exclude i686 arch. Due to a modularity issue it's being added to the
+BuildRequires:  python3-pytest
-# x86_64 compose of CRB, but we don't want to ship it at all.
+BuildRequires:  python3-pytest-timeout
-# See: https://projects.engineering.redhat.com/browse/RCM-72605
+%if ! 0%{?rhel}
-ExcludeArch: i686
+BuildRequires:  python3-pytest-xdist
-
-BuildRequires: fftw-devel, blas-devel, lapack-devel, suitesparse-devel
-%ifarch %{openblas_arches}
-BuildRequires: openblas-devel
-%else
-BuildRequires: atlas-devel
 %endif
-BuildRequires: gcc-gfortran, swig, gcc-c++
+%if %{with pooch}
-BuildRequires: qhull-devel
+BuildRequires:  python3-pooch
-BuildRequires: /usr/bin/pathfix3.8.py
-
-BuildRequires:  python%{python3_pkgversion}-devel
-BuildRequires:  python%{python3_pkgversion}-numpy
-BuildRequires:  python%{python3_pkgversion}-numpy-f2py
-BuildRequires:  python%{python3_pkgversion}-setuptools
-BuildRequires:  python%{python3_pkgversion}-Cython
-BuildRequires:  python%{python3_pkgversion}-rpm-macros
-
-%if %{with tests}
-BuildRequires:  python%{python3_pkgversion}-pytest
-BuildRequires:  python%{python3_pkgversion}-pytest-xdist
-BuildRequires:  python%{python3_pkgversion}-pytest-timeout
 %endif
 
 %if %{with doc}
-BuildRequires:  python%{python3_pkgversion}-sphinx
+BuildRequires:  python3-sphinx
-BuildRequires:  python%{python3_pkgversion}-matplotlib
+BuildRequires:  python3-matplotlib
-BuildRequires:  python%{python3_pkgversion}-numpydoc
+BuildRequires:  python3-numpydoc
 %endif
 
 %global _description %{expand:
@@ -79,136 +105,438 @@ leading scientists and engineers.}
 
 %description %_description
 
-%package -n python%{python3_pkgversion}-scipy
+%package -n python3-scipy
 Summary:    Scientific Tools for Python
-Requires:   python%{python3_pkgversion}-numpy, python%{python3_pkgversion}-numpy-f2py
+Requires:   python3-numpy, python3-f2py
-%{?python_provide:%python_provide python%{python3_pkgversion}-scipy}
+%if %{with pooch}
-%description -n python%{python3_pkgversion}-scipy %_description
+Requires:   python3-pooch
+%endif
+Provides:   bundled(arpack) = 3.3.0
+Provides:   bundled(biasedurn)
+Provides:   bundled(boost-math)
+Provides:   bundled(coin-or-HiGHS) = 1.2
+Provides:   bundled(Faddeeva)
+Provides:   bundled(id)
+Provides:   bundled(l-bfgs-b) = 3.0
+Provides:   bundled(LAPJVsp)
+Provides:   bundled(python3-decorator) = 4.0.5
+Provides:   bundled(python3-pep440)
+Provides:   bundled(python3-pypocketfft) = bf2c431c21213b7c5e23c2f542009b0bd3ec1445
+Provides:   bundled(qhull) = 2019.1
+Provides:   bundled(SuperLU) = 5.2.0
+Provides:   bundled(unuran) = 1.8.1
+%description -n python3-scipy %_description
 
 %if %{with doc}
-%package -n python%{python3_pkgversion}-scipy-doc
+%package -n python3-scipy-doc
 Summary:    Scientific Tools for Python - documentation
-Requires:   python%{python3_pkgversion}-scipy = %{version}-%{release}
+Requires:   python3-scipy = %{version}-%{release}
-%description -n python%{python3_pkgversion}-scipy-doc
+%description -n python3-scipy-doc
 HTML documentation for Scipy
 %endif
 
+%package -n python3-scipy-tests
+Summary:    Scientific Tools for Python - test files
+Requires:   python3-scipy = %{version}-%{release}
+Requires:   python3-pytest
+%description -n python3-scipy-tests
+Scipy test files
 
 %prep
 %autosetup -p1 -n %{name}-%{version}%{?rcver}
-cat > site.cfg << EOF
 
-[amd]
+# Remove pythran dependency if not explicitly required
-library_dirs = %{_libdir}
+%if %{without pythran}
-include_dirs = /usr/include/suitesparse
+sed -i '/pythran/d' pyproject.toml
-amd_libs = amd
-
-[umfpack]
-library_dirs = %{_libdir}
-include_dirs = /usr/include/suitesparse
-umfpack_libs = umfpack
-
-%ifarch %{openblas_arches}
-[openblas]
-libraries = openblasp
-library_dirs = %{_libdir}
 %endif
+%if %{without pooch}
+sed -i 's/, "pooch"]/]/g' pyproject.toml
+sed -i '/pooch/d' pyproject.toml
+%endif
+
+cat >> pyproject.toml << EOF
+
+[tool.meson-python.args]
+setup = ['-Dblas=%{blaslib}%{blasvar}', '-Dlapack=%{blaslib}%{blasvar}'%{!?with_pythran:, '-Duse-pythran=false'}]
 EOF
 
-# Docs won't build unless the .dat files are specified here
+# Enable build with Python 3.13+
-sed -i 's/metadata = dict(/metadata = dict(package_data={"": ["*.dat"]},/' setup.py
+# Upstream only allows Python pre-releases in git HEAD, not in releases.
+# However in Fedora, we actively build packages with Python pre-releases very soon.
+sed -i 's/requires-python = ">=3.9,<3.13"/requires-python = ">=3.9"/' pyproject.toml
 
-# remove bundled numpydoc
+# Docs won't build unless the .dat files are specified here
-rm doc/sphinxext -r
+sed -i 's/metadata = dict(/metadata = dict(package_data={"": ["*.dat"]},/' _setup.py
 
 rm $(grep -rl '/\* Generated by Cython') PKG-INFO
 
-%build
+# numpy no longer contains a copy of distutils
-for PY in %{python3_version}; do
+for f in $(grep -Frl numpy.distutils); do
-  env CFLAGS="$RPM_OPT_FLAGS -lm" \
+  sed -i.orig 's/numpy\.\(distutils\)/\1/g' $f
-      FFLAGS="$RPM_OPT_FLAGS -fPIC -cpp" \
+  touch -r $f.orig $f
-      LDFLAGS="$RPM_LD_FLAGS -shared" \
+  rm $f.orig
-    %{_bindir}/python$PY setup.py config_fc \
+done
-    --fcompiler=gnu95 --noarch \
-    build
 
-  %if %{with doc}
+# Do not do benchmarking or coverage testing for RPM builds
+sed -i '/^[[:blank:]]*"(asv|pytest-cov)"/d' pyproject.toml
+
+# No scikit-umfpack in Fedora
+sed -i '/^[[:blank:]]*"scikit-umfpack"/d' pyproject.toml
+
+# No pytest-xdist in RHEL
+%if 0%{?rhel}
+sed -i '/^[[:blank:]]*"pytest-xdist"/d' pyproject.toml
+%endif
+
+# Loosen the lower bound on numpy
+sed -i "/numpy.*python_version=='3.12'/s/1\.26\.0/1\.24\.4/" pyproject.toml
+
+# Loosen the upper bound on meson-python
+sed -i '/meson-python/s/0\.15\.0/0\.16\.0/' pyproject.toml
+
+# Loosen the upper bound on Cython
+sed -i '/Cython/s/3\.0/3\.1/' pyproject.toml
+
+# Loosen the upper bound on pybind11
+sed -i '/pybind11/s/2\.11\.1/2.12.0/' pyproject.toml
+
+# Work around failure to detect open_memstream.  In glibc, open_memstream is
+# not a real function.  It is a weak alias to __open_memstream.
+sed -i "s/\('has_openmemstream', \)'0'/\1'1'/" scipy/_lib/meson.build
+
+%generate_buildrequires
+%pyproject_buildrequires -R
+
+%build
+%pyproject_wheel
+
+%if %{with doc}
+for PY in %{python3_version}; do
   pushd doc
   export PYTHONPATH=$(echo ../build/lib.linux-*-$PY/)
   make html SPHINXBUILD=sphinx-build-$PY
   rm -rf build/html/.buildinfo
   mv build build-$PY
   popd
-  %endif
 done
+%endif
 
 %install
-%py3_install
+%pyproject_install
-# Some files got ambiguous python shebangs, we fix them after everything else is done
+%pyproject_save_files scipy
-pathfix3.8.py -pni "%{__python3} %{py3_shbang_opts}" %{buildroot}%{python3_sitearch}
+
+# Some files got ambiguous python shebangs, we fix them after everything else is done
+%py3_shebang_fix %{buildroot}%{python3_sitearch}
+
+# Fix executable bits
+chmod 0755 %{buildroot}%{python3_sitearch}/scipy/sparse/linalg/_isolve/tests/test_gcrotmk.py
 
-%if %{with tests}
 %check
-# Skip all tests on s390x because they hangs unexpectedly and randomly
+# check against the reference BLAS/LAPACK
-# and pytest-timeout has no effect. Note that the outcome of the tests
+export FLEXIBLAS=netlib
-# was previously ignored anyway so by disabling the test for s390x we
+
-# are not doing anything more dangerous.
+# default test timeout
+TIMEOUT=500
+
+# TestDatasets try to download from the internet
+SKIP_ALL="not TestDatasets"
+export PYTEST_ADDOPTS="-k '$SKIP_ALL'"
+
+%ifarch ppc64le
+export PYTEST_ADDOPTS="-k '$SKIP_ALL and \
+not test_eigs and \
+not test_gees_trexc and \
+not test_gees_trsen and \
+not test_trexc_NAG and \
+not test_trsen_NAG and \
+not test_real_nonsymmetric_modes and \
+not test_real_eigs_real_k_subset and \
+not test_ticket_1459_arpack_crash'"
+TIMEOUT=1000
+%endif
+
+%ifarch aarch64
+# TestConstructUtils::test_concatenate_int32_overflow is flaky on aarch64
+export PYTEST_ADDOPTS="-k '$SKIP_ALL and \
+not test_concatenate_int32_overflow'"
+TIMEOUT=1000
+%endif
+
 %ifarch s390x
-exit 0
+# https://bugzilla.redhat.com/show_bug.cgi?id=1959353
+export PYTEST_ADDOPTS="-k '$SKIP_ALL and \
+not test_distance_transform_cdt05'"
+TIMEOUT=1000
 %endif
 
 %ifarch x86_64
-export ACCEPTABLE_FAILURE_RATE=0
+%if 0%{?rhel}
-%else
+export PYTEST_ADDOPTS="-k '$SKIP_ALL and \
-# there are usually 10-21 test failing, so we allow 1% failure rate
+not test_list_of_problems and \
-export ACCEPTABLE_FAILURE_RATE=1
+not test_gh7799'"
+%endif
 %endif
 
-%ifarch ppc64le
+%ifarch i686
-# test_decomp segfaults on ppc64le
+# https://github.com/scipy/scipy/issues/17213
-export k="not test_denormals and not test_decomp"
+export PYTEST_ADDOPTS="-k '$SKIP_ALL and \
-%else
+not test_gh12218 and \
-# test_denormals tends to stuck
+not test_examples and \
-export k="not test_denormals"
+not test_shifts and \
+not test_svdp'"
 %endif
 
-# Do not create -PYTEST.pyc files
+%ifarch riscv64
-export PYTHONDONTWRITEBYTECODE=1
+export PYTEST_ADDOPTS="-k '$SKIP_ALL and \
+not TestSchur and \
+not test_gejsv_general and \
+not test_kendall_p_exact_large and \
+not test_gejsv_edge_arguments and \
+not test_gh12999 and \
+not test_propack and \
+not test_milp and \
+not test_gejsv_NAG'"
+%endif
 
 pushd %{buildroot}/%{python3_sitearch}
-# TODO TestIQR.test_scale fails on Python 3.8+ due to some warnings, investigate
+# Ignoring the datasets tests as we don't have the optional pooch
-%{__python3} -m pytest --timeout=300 -k "$k and not (TestIQR and test_scale)" scipy --numprocesses=auto
+# dependency on RHEL.
+%{pytest} %{!?with_pooch:--ignore=scipy/datasets/tests/test_data.py} --timeout=${TIMEOUT} scipy %{?!rhel:--numprocesses=auto}
 # Remove test remnants
 rm -rf gram{A,B}
+rm -rf .pytest_cache
 popd
-%endif
 
-%files -n python%{python3_pkgversion}-scipy
+%files -n python3-scipy -f %{pyproject_files}
-%doc LICENSE.txt
+%license LICENSE.txt LICENSES_bundled.txt
-%{python3_sitearch}/scipy/
+%exclude %{python3_sitearch}/scipy/*/tests/
-%{python3_sitearch}/*.egg-info
+%exclude %{python3_sitearch}/scipy/*/*/tests/
+%exclude %{python3_sitearch}/scipy/*/*/*/tests/
+%exclude %{python3_sitearch}/scipy/*/*/*/*/tests/ 
+
+%files -n python3-scipy-tests
+%{python3_sitearch}/scipy/*/tests/
+%{python3_sitearch}/scipy/*/*/tests/
+%{python3_sitearch}/scipy/*/*/*/tests/
+%{python3_sitearch}/scipy/*/*/*/*/tests/
 
 %if %{with doc}
-%files -n python%{python3_pkgversion}-scipy-doc
+%files -n python3-scipy-doc
 %license LICENSE.txt
 %doc doc/build-%{python3_version}/html
 %endif
 
 %changelog
-* Fri Jul 14 2023 Charalampos Stratakis <cstratak@redhat.com> - 1.3.1-5
+* Tue Oct 29 2024 Troy Dawson <tdawson@redhat.com> - 1.11.3-17
+- Bump release for October 2024 mass rebuild:
+  Resolves: RHEL-64018
+
+* Wed Oct 02 2024 Pavel Simovec <psimovec@redhat.com> - 1.11.3-16
+- Waive annocheck results: --skip-implicit-values
+- Resolves: RHEL-33519
+
+* Mon Jul 29 2024 Pavel Simovec <psimovec@redhat.com> - 1.11.3-15
+- Waive annocheck results: --skip-fortify and --skip-lto 
+- Resolves: RHEL-33519
+
+* Thu Jun 27 2024 Pavel Simovec <psimovec@redhat.com> - 1.11.3-14
+- rebuilt
+
+* Wed Jun 26 2024 Pavel Simovec <psimovec@redhat.com> - 1.11.3-13
+- Waive annocheck results: --skip-fortify and --skip-lto 
+- Resolves: RHEL-33519
+
+* Mon Jun 24 2024 Troy Dawson <tdawson@redhat.com> - 1.11.3-12
+- Bump release for June 2024 mass rebuild
+
+* Fri Jun 07 2024 Pavel Simovec <psimovec@redhat.com> - 1.11.3-11
+- Fix python-pooch not fully removed
+- Resolves: RHEL-35429
+
+* Fri Jun 07 2024 Richard W.M. Jones <rjones@redhat.com> - 1.11.3-10
+- Enable riscv64
+
+* Tue May 28 2024 Pavel Simovec <psimovec@redhat.com> - 1.11.3-9
+- Remove python-pooch optional dependency from RHEL
+- Related: RHELMISC-5321
+
+* Thu May 02 2024 Pavel Simovec <psimovec@redhat.com> - 1.11.3-8
+- Build without pythran in RHEL by default
+- Resolves: RHEL-33955
+
+* Fri Apr 26 2024 Pavel Simovec <psimovec@redhat.com> - 1.11.3-7
+- Fully remove pythran dependency
+- Resolves: RHEL-33955
+
+* Tue Jan 30 2024 Miro Hrončok <mhroncok@redhat.com> - 1.11.3-6
+- Skip fewer tests during build
+
+* Mon Jan 29 2024 Florian Weimer <fweimer@redhat.com> - 1.11.3-5
+- Disable incompatible-pointer-types errors on i686 (#2258823)
+
+* Sat Jan 27 2024 Fedora Release Engineering <releng@fedoraproject.org> - 1.11.3-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
+
+* Thu Nov 30 2023 Karolina Surma <ksurma@redhat.com> - 1.11.3-3
+- Fix the build without pythran
+
+* Wed Nov 01 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 1.11.3-2
+- Patch error collecting tests with pytest-xdist
+
+* Wed Oct 11 2023 Jerry James <loganjerry@gmail.com> - 1.11.3-1
+- New upstream release 1.11.3
+  resolves: #2211813
+- Convert License tag to SPDX
+- Add Provides for bundled projects
+- Disable LTO
+- Pythran works on 32-bit architectures again
+- Fix detection of open_memstream
+- Use pyproject macros instead of the deprecated py3 macros
+- Reenable some tests that work again
+- Remove unused BuildRequires
+
+* Wed Jul 12 2023 psimovec <psimovec@redhat.com> - 1.11.1-1
+- New upstream release 1.11.1
+  resolves: #2211813
+- Separate tests into subpackage python3-scipy-tests
+
+* Mon Jul 10 2023 Python Maint <python-maint@redhat.com> - 1.10.1-5
+- Rebuilt for Python 3.12
+
+* Wed Jun 14 2023 Python Maint <python-maint@redhat.com> - 1.10.1-4
+- Bootstrap for Python 3.12
+
+* Tue May 23 2023 Yaakov Selkowitz <yselkowi@redhat.com> - 1.10.1-3
+- Avoid pytest-xdist dependency in RHEL builds
+
+* Wed Mar 15 2023 Pavel Šimovec <psimovec@redhat.com> - 1.10.1-2
+- Remove workaround for linking issue on x86_64
+- resolves: #2068530
+
+* Wed Feb 22 2023 Pavel Šimovec <psimovec@redhat.com> - 1.10.1-1
+- New upstream release 1.10.1
+  resolves: #2101172
+- Use the optional python3-pooch dependency
+
+* Sat Jan 21 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.8.1-7
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
+
+* Sat Jul 23 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.8.1-6
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
+
+* Sun Jul  3 2022 Mamoru TASAKA <mtasaka@fedoraproject.org> - 1.8.1-5
+- Fix linalg.lapack syevr segfault (#2099102)
+
+* Fri Jun 17 2022 Python Maint <python-maint@redhat.com> - 1.8.1-4
+- Rebuilt for Python 3.11
+
+* Tue Jun 14 2022 Python Maint <python-maint@redhat.com> - 1.8.1-3
+- Bootstrap for Python 3.11
+
+* Tue Jun 14 2022 Python Maint <python-maint@redhat.com> - 1.8.1-2
+- Rebuilt for Python 3.11
+
+* Thu Jun 09 2022 Nikola Forró <nforro@redhat.com> - 1.8.1-1
+- New upstream release 1.8.1
+  resolves: #2088437
+
+* Sat Mar 26 2022 Nikola Forró <nforro@redhat.com> - 1.8.0-3
+- Skip test_cython_api also on armv7hl
+
+* Sat Mar 26 2022 Nikola Forró <nforro@redhat.com> - 1.8.0-2
+- Disable pythran on armv7hl as well
+
+* Mon Feb 07 2022 Nikola Forró <nforro@redhat.com> - 1.8.0-1
+- New upstream release 1.8.0
+  resolves: #2035126
+
+* Sat Jan 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.7.3-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
+
+* Tue Dec 21 2021 Nikola Forró <nforro@redhat.com> - 1.7.3-1
+- New upstream release 1.7.3
+  resolves: #1988883
+
+* Fri Jul 23 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.7.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
+
+* Wed Jul 14 2021 Miro Hrončok <mhroncok@redhat.com> - 1.7.0-2
+- Use the optional Pythran build dependency
+
+* Wed Jun 23 2021 Nikola Forró <nforro@redhat.com> - 1.7.0-1
+- New upstream release 1.7.0
+  resolves: #1953422
+
+* Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 1.6.2-4
+- Rebuilt for Python 3.10
+
+* Fri Apr 23 2021 Nikola Forró <nforro@redhat.com> - 1.6.2-3
 - Remove RPATH from certain shared object files
-- Resolves: rhbz#2222717
 
-* Thu Dec 12 2019 Tomas Orsava <torsava@redhat.com> - 1.3.1-4
+* Tue Mar 30 2021 Jonathan Wakely <jwakely@redhat.com> - 1.6.2-2
-- Exclude unsupported i686 arch
+- Rebuilt for removed libstdc++ symbol (#1937698)
 
-* Tue Dec 03 2019 Lumír Balhar <lbalhar@redhat.com> - 1.3.1-3
+* Thu Mar 25 2021 Nikola Forró <nforro@redhat.com> - 1.6.2-1
-- Specify LDFLAGS explicitly
+- New upstream release 1.6.2
-- Force preprocessing of Fortran sources to make annobin record proper flags
+  resolves: #1942896
-- Resolves: rhbz#1778983
 
-* Thu Nov 21 2019 Lumír Balhar <lbalhar@redhat.com> - 1.3.1-2
+* Thu Feb 18 2021 Nikola Forró <nforro@redhat.com> - 1.6.1-1
-- Adjusted for Python 3.8 module in RHEL 8
+- New upstream release 1.6.1
+  resolves: #1929994
+
+* Wed Feb 03 2021 Nikola Forró <nforro@redhat.com> - 1.6.0-3
+- Increase test timeout on s390x
+
+* Wed Jan 27 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.6.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
+
+* Mon Jan 04 2021 Nikola Forró <nforro@redhat.com> - 1.6.0-1
+- New upstream release 1.6.0
+  resolves: #1906692
+
+* Wed Nov 25 2020 Nikola Forró <nforro@redhat.com> - 1.5.4-2
+- Skip factorial() float tests on Python 3.10
+  resolves: #1898157
+
+* Thu Nov 05 2020 Nikola Forró <nforro@redhat.com> - 1.5.4-1
+- New upstream release 1.5.4
+- Increase test timeout, 300 seconds is not always enough
+  for test_logpdf_overflow on s390x
+  resolves: #1894887
+
+* Mon Oct 19 2020 Nikola Forró <nforro@redhat.com> - 1.5.3-1
+- New upstream release 1.5.3
+  resolves: #1889132
+
+* Wed Sep 30 2020 Nikola Forró <nforro@redhat.com> - 1.5.2-2
+- Skip one more test expected to fail on 32-bit architectures
+
+* Mon Aug 31 2020 Nikola Forró <nforro@redhat.com> - 1.5.2-1
+- New upstream release 1.5.2
+  resolves: #1853871 and #1840077
+
+* Sun Aug 16 2020 Iñaki Úcar <iucar@fedoraproject.org> - 1.5.0-4
+- https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager
+
+* Sat Aug 01 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.5.0-3
+- Second attempt - Rebuilt for
+  https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
+
+* Wed Jul 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.5.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
+
+* Tue Jun 23 2020 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 1.5.0-1
+- Update to latest version
+
+* Mon May 25 2020 Miro Hrončok <mhroncok@redhat.com> - 1.4.1-2
+- Rebuilt for Python 3.9
+
+* Sun Mar 01 2020 Orion Poplawski <orion@nwra.com> - 1.4.1-1
+- Update to 1.4.1 (bz#1771154)
+- Workaround FTBFS with gcc 10 (bz#1800078)
+
+* Thu Jan 30 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.3.1-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
 
 * Fri Oct 18 2019 Miro Hrončok <mhroncok@redhat.com> - 1.3.1-1
 - Update to 1.3.1 (#1674101)

sources

@@ -0,0 +1 @@
+SHA512 (scipy-1.11.3.tar.gz) = 6491c4e479d9f4f02e677396a25ddca947a0dc6c009fc2ec34c658012a6224c0b535f14045bb011fbde9973ea987d184574ed64e6760c31798ec860eb0896fcf