diff --git a/python3.11-scipy.spec b/python3.11-scipy.spec index f94f6f6..88bc21f 100644 --- a/python3.11-scipy.spec +++ b/python3.11-scipy.spec @@ -1,15 +1,10 @@ -# without means enabled -%bcond_with doc +%global __python3 /usr/bin/python3.11 +%global python3_pkgversion 3.11 # Pythran is an optional build dependency. # When used, it makes some modules faster, # but it is usually not available soon enough for new major Python versions. -%ifarch i686 || armv7hl -# It seems pythran is broken on 32-bit arches, disable it %bcond_with pythran -%else -%bcond_without pythran -%endif # Set to pre-release version suffix if building pre-release, else %%{nil} %global rcver %{nil} @@ -22,10 +17,12 @@ %global blasvar p %endif +%global modname scipy + Summary: Scientific Tools for Python -Name: scipy +Name: python%{python3_pkgversion}-scipy Version: 1.8.1 -Release: 6%{?dist} +Release: 1%{?dist} # BSD -- whole package except: # Boost -- scipy/special/cephes/scipy_iv.c @@ -37,30 +34,28 @@ Source0: https://github.com/scipy/scipy/releases/download/v%{version}/scipy-% # https://github.com/scipy/scipy/issues/16527 # https://github.com/scipy/scipy/pull/16528 Patch0: scipy-1.8.1-syevr-operator-order-explicit.patch +# Fix test_moments failing test +# https://github.com/scipy/scipy/pull/16593 +Patch1: scipy-1.8.1-test_moments-benchmark.patch BuildRequires: fftw-devel, suitesparse-devel BuildRequires: %{blaslib}-devel BuildRequires: gcc-gfortran, swig, gcc-c++ BuildRequires: qhull-devel -BuildRequires: pybind11-devel -BuildRequires: python3-pybind11 >= 2.4.0 -BuildRequires: python3-numpy, python3-devel, python3-numpy-f2py -BuildRequires: python3-setuptools -BuildRequires: python3-Cython -BuildRequires: python3-pytest -BuildRequires: python3-pytest-xdist -BuildRequires: python3-pytest-timeout +BuildRequires: python%{python3_pkgversion}-pybind11-devel +BuildRequires: python%{python3_pkgversion}-pybind11 >= 2.4.0 +BuildRequires: python%{python3_pkgversion}-numpy, python%{python3_pkgversion}-devel, python%{python3_pkgversion}-numpy-f2py +BuildRequires: python%{python3_pkgversion}-rpm-macros +BuildRequires: python%{python3_pkgversion}-setuptools +BuildRequires: python%{python3_pkgversion}-Cython +BuildRequires: python%{python3_pkgversion}-pytest %if %{with pythran} BuildRequires: pythran %endif -%if %{with doc} -BuildRequires: python3-sphinx -BuildRequires: python3-matplotlib -BuildRequires: python3-numpydoc -%endif +Requires: python%{python3_pkgversion}-numpy, python%{python3_pkgversion}-f2py %global _description %{expand: Scipy is open-source software for mathematics, science, and @@ -75,23 +70,8 @@ leading scientists and engineers.} %description %_description -%package -n python3-scipy -Summary: Scientific Tools for Python -Requires: python3-numpy, python3-f2py -%{?python_provide:%python_provide python3-scipy} -%description -n python3-scipy %_description - -%if %{with doc} -%package -n python3-scipy-doc -Summary: Scientific Tools for Python - documentation -Requires: python3-scipy = %{version}-%{release} -%description -n python3-scipy-doc -HTML documentation for Scipy -%endif - - %prep -%autosetup -p1 -n %{name}-%{version}%{?rcver} +%autosetup -p1 -n %{modname}-%{version}%{?rcver} cat > site.cfg << EOF [amd] @@ -109,43 +89,26 @@ libraries = %{blaslib}%{blasvar} library_dirs = %{_libdir} EOF -# Docs won't build unless the .dat files are specified here -sed -i 's/metadata = dict(/metadata = dict(package_data={"": ["*.dat"]},/' setup.py - -# remove bundled numpydoc -rm doc/sphinxext -r - rm $(grep -rl '/\* Generated by Cython') PKG-INFO %build export SCIPY_USE_PYTHRAN=0%{?with_pythran} -for PY in %{python3_version}; do +for PY in %{python3_pkgversion}; do # Adding -fallow-argument-mismatch workaround for https://github.com/scipy/scipy/issues/11611 env CFLAGS="$RPM_OPT_FLAGS -lm" \ - %if 0%{?fedora} >= 32 || 0%{?rhel} >= 9 - FFLAGS="$RPM_OPT_FLAGS -fPIC -fallow-argument-mismatch" \ - %else - FFLAGS="$RPM_OPT_FLAGS -fPIC" \ - %endif + FFLAGS="$RPM_OPT_FLAGS -fPIC -cpp" \ + LDFLAGS="$RPM_LD_FLAGS -shared" \ + %if 0%{?rhel} >= 9 %ifarch x86_64 # workaround for https://bugzilla.redhat.com/show_bug.cgi?id=2068530 LDFLAGS="%{__global_ldflags} -Wl,--no-as-needed -lmvec -Wl,--as-needed" \ - %else - LDFLAGS="%{__global_ldflags}" \ + %endif %endif %{_bindir}/python$PY setup.py config_fc \ --fcompiler=gnu95 --noarch \ build - %if %{with doc} - pushd doc - export PYTHONPATH=$(echo ../build/lib.linux-*-$PY/) - make html SPHINXBUILD=sphinx-build-$PY - rm -rf build/html/.buildinfo - mv build build-$PY - popd - %endif done %install @@ -194,530 +157,52 @@ export PYTEST_ADDOPTS="-k 'not TestSchur and not test_sygst and not test_cython_ %endif pushd %{buildroot}/%{python3_sitearch} -%{pytest} --timeout=${TIMEOUT} scipy --numprocesses=auto +%{pytest} scipy # Remove test remnants rm -rf gram{A,B} popd -%files -n python3-scipy +%files -n python%{python3_pkgversion}-scipy %doc LICENSE.txt %{python3_sitearch}/scipy/ %{python3_sitearch}/*.egg-info -%if %{with doc} -%files -n python3-scipy-doc -%license LICENSE.txt -%doc doc/build-%{python3_version}/html -%endif - %changelog -* Sat Jul 23 2022 Fedora Release Engineering - 1.8.1-6 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild - -* Sun Jul 3 2022 Mamoru TASAKA - 1.8.1-5 -- Fix linalg.lapack syevr segfault (#2099102) - -* Fri Jun 17 2022 Python Maint - 1.8.1-4 -- Rebuilt for Python 3.11 - -* Tue Jun 14 2022 Python Maint - 1.8.1-3 -- Bootstrap for Python 3.11 - -* Tue Jun 14 2022 Python Maint - 1.8.1-2 -- Rebuilt for Python 3.11 - -* Thu Jun 09 2022 Nikola Forró - 1.8.1-1 -- New upstream release 1.8.1 - resolves: #2088437 - -* Sat Mar 26 2022 Nikola Forró - 1.8.0-3 -- Skip test_cython_api also on armv7hl - -* Sat Mar 26 2022 Nikola Forró - 1.8.0-2 -- Disable pythran on armv7hl as well - -* Mon Feb 07 2022 Nikola Forró - 1.8.0-1 -- New upstream release 1.8.0 - resolves: #2035126 - -* Sat Jan 22 2022 Fedora Release Engineering - 1.7.3-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild - -* Tue Dec 21 2021 Nikola Forró - 1.7.3-1 -- New upstream release 1.7.3 - resolves: #1988883 - -* Fri Jul 23 2021 Fedora Release Engineering - 1.7.0-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild - -* Wed Jul 14 2021 Miro Hrončok - 1.7.0-2 -- Use the optional Pythran build dependency - -* Wed Jun 23 2021 Nikola Forró - 1.7.0-1 -- New upstream release 1.7.0 - resolves: #1953422 - -* Fri Jun 04 2021 Python Maint - 1.6.2-4 -- Rebuilt for Python 3.10 - -* Fri Apr 23 2021 Nikola Forró - 1.6.2-3 -- Remove RPATH from certain shared object files - -* Tue Mar 30 2021 Jonathan Wakely - 1.6.2-2 -- Rebuilt for removed libstdc++ symbol (#1937698) - -* Thu Mar 25 2021 Nikola Forró - 1.6.2-1 -- New upstream release 1.6.2 - resolves: #1942896 - -* Thu Feb 18 2021 Nikola Forró - 1.6.1-1 -- New upstream release 1.6.1 - resolves: #1929994 - -* Wed Feb 03 2021 Nikola Forró - 1.6.0-3 -- Increase test timeout on s390x - -* Wed Jan 27 2021 Fedora Release Engineering - 1.6.0-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild - -* Mon Jan 04 2021 Nikola Forró - 1.6.0-1 -- New upstream release 1.6.0 - resolves: #1906692 - -* Wed Nov 25 2020 Nikola Forró - 1.5.4-2 -- Skip factorial() float tests on Python 3.10 - resolves: #1898157 - -* Thu Nov 05 2020 Nikola Forró - 1.5.4-1 -- New upstream release 1.5.4 -- Increase test timeout, 300 seconds is not always enough - for test_logpdf_overflow on s390x - resolves: #1894887 - -* Mon Oct 19 2020 Nikola Forró - 1.5.3-1 -- New upstream release 1.5.3 - resolves: #1889132 - -* Wed Sep 30 2020 Nikola Forró - 1.5.2-2 -- Skip one more test expected to fail on 32-bit architectures - -* Mon Aug 31 2020 Nikola Forró - 1.5.2-1 -- New upstream release 1.5.2 - resolves: #1853871 and #1840077 - -* Sun Aug 16 2020 Iñaki Úcar - 1.5.0-4 -- https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager - -* Sat Aug 01 2020 Fedora Release Engineering - 1.5.0-3 -- Second attempt - Rebuilt for - https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild - -* Wed Jul 29 2020 Fedora Release Engineering - 1.5.0-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild - -* Tue Jun 23 2020 Elliott Sales de Andrade - 1.5.0-1 -- Update to latest version - -* Mon May 25 2020 Miro Hrončok - 1.4.1-2 -- Rebuilt for Python 3.9 - -* Sun Mar 01 2020 Orion Poplawski - 1.4.1-1 -- Update to 1.4.1 (bz#1771154) -- Workaround FTBFS with gcc 10 (bz#1800078) - -* Thu Jan 30 2020 Fedora Release Engineering - 1.3.1-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild - -* Fri Oct 18 2019 Miro Hrončok - 1.3.1-1 -- Update to 1.3.1 (#1674101) -- Drop Python 2 packages (not supported by SciPy >= 1.3) -- Backported upstream patch for cKDTree (fixes FTBFS) - -* Thu Oct 03 2019 Miro Hrončok - 1.2.1-8 -- Rebuilt for Python 3.8.0rc1 (#1748018) - -* Mon Aug 19 2019 Miro Hrončok - 1.2.1-7 -- Rebuilt for Python 3.8 - -* Tue Jul 30 2019 Petr Viktorin - 1.2.1-6 -- Remove build dependency on python2-pytest-xdist and python2-pytest-timeout -- Enable parallel tests in Python 3 %%check -- Use macros for Python interpreter in tests - -* Fri Jul 26 2019 Fedora Release Engineering - 1.2.1-5 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild - -* Mon Jun 10 2019 Marcel Plch - 1.2.1-4 -- Fix FTBFS with Py3.8 (#1606315) - -* Thu May 16 2019 Orion Poplawski - 1.2.1-3 -- Build only against openblasp (bugz#1709161) - -* Fri Apr 26 2019 Orion Poplawski - 1.2.1-2 -- Do not create *-PYTEST.pyc files - -* Tue Apr 23 2019 Orion Poplawski - 1.2.1-1 -- Update to 1.2.1 -- Drop scipy2-doc - -* Wed Feb 06 2019 Charalampos Stratakis - 1.2.0-1 -- Update to 1.2.0 - -* Sat Feb 02 2019 Fedora Release Engineering - 1.1.0-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild - -* Sat Jul 14 2018 Fedora Release Engineering - 1.1.0-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild - -* Sat Jun 23 2018 Miro Hrončok - 1.1.0-2 -- Don't ignore the tests results but rather have a tolerance rate -- Skip test_decomp on ppc64le as it currently segfaults - -* Fri Jun 22 2018 Miro Hrončok - 1.1.0-1 -- Update to 1.1.0 (#1560265, #1594355) - -* Tue Jun 19 2018 Miro Hrončok - 1.0.0-8 -- Rebuilt for Python 3.7 - -* Fri Feb 09 2018 Fedora Release Engineering - 1.0.0-7 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild - -* Fri Feb 02 2018 Petr Viktorin - 1.0.0-6 -- Link with -lm to build with new stricter Fedora flags - https://bugzilla.redhat.com/show_bug.cgi?id=1541416 - -* Wed Jan 31 2018 Christian Dersch - 1.0.0-5 -- rebuilt for GCC 8.x (gfortran soname bump) - -* Mon Dec 11 2017 Lumír Balhar - 1.0.0-4 -- Disable tests on s390x - -* Mon Nov 20 2017 Lumír Balhar - 1.0.0-3 -- New subpackages with HTML documentation - -* Tue Oct 31 2017 Christian Dersch - 1.0.0-2 -- Use openblas where available https://fedoraproject.org/wiki/Changes/OpenBLAS_as_default_BLAS -- Remove ppc64 hackery for OpenBLAS -- Don't run tests in parallel as pytest crashes -- Don't run test_denormals as it tends to stuck - -* Thu Oct 26 2017 Thomas Spura - 1.0.0-1 -- update to 1.0.0 and use pytest instead of nose -- use timeout during parallel %%check - -* Wed Oct 04 2017 Christian Dersch - 0.19.1-5 -- Use openblas where available (except ppc64), to use same as numpy (BZ 1472318) - -* Thu Aug 03 2017 Fedora Release Engineering - 0.19.1-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild - -* Thu Jul 27 2017 Fedora Release Engineering - 0.19.1-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild - -* Fri Jul 07 2017 Igor Gnatenko - 0.19.1-2 -- Rebuild due to bug in RPM (RHBZ #1468476) - -* Tue Jun 27 2017 Christian Dersch - 0.19.1-1 -- new version - -* Wed Jun 07 2017 Christian Dersch - 0.19.0-1 -- new version - -* Tue Jan 31 2017 Zbigniew Jędrzejewski-Szmek - 0.18.0-3 -- Rebuild for libgfortran.so.3 - -* Mon Dec 12 2016 Stratakis Charalampos - 0.18.0-2 -- Rebuild for Python 3.6 - -* Tue Jul 26 2016 Than Ngo - 0.18.0-1 -- 0.18.0 -- %%check: make non-fatal as temporary workaround for scipy build on arm - -* Tue Jul 19 2016 Fedora Release Engineering - 0.17.0-2 -- https://fedoraproject.org/wiki/Changes/Automatic_Provides_for_Python_RPM_Packages - -* Tue May 31 2016 Nils Philippsen -- fix source URL - -* Mon Feb 15 2016 Orion Poplawski - 0.17.0-1 -- Update to 0.17.0 -- Drop ctypes patch applied upstream - -* Thu Feb 04 2016 Fedora Release Engineering - 0.16.1-7 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild - -* Sat Nov 21 2015 Kalev Lember - 0.16.1-6 -- Add provides to satisfy scipy%%{_isa} requires in other packages - -* Sun Nov 15 2015 Björn Esser - 0.16.1-5 -- Revert "Discard results of testsuite on %%{arm} for now" - -* Sat Nov 14 2015 Björn Esser - 0.16.1-4 -- Discard results of testsuite on %%{arm} for now - Segfaults on non-aligned memory test (expected for arm) - -* Sat Nov 14 2015 Thomas Spura - 0.16.1-3 -- Add patch to fix ctypes test -- Move requires to correct python2 subpackage -- Add FFLAGS also in %%install - -* Tue Nov 10 2015 Fedora Release Engineering - 0.16.1-2 -- Rebuilt for https://fedoraproject.org/wiki/Changes/python3.5 - -* Mon Oct 26 2015 Orion Poplawski - 0.16.1-1 -- Update to 0.16.1 - -* Wed Oct 14 2015 Thomas Spura - 0.16.0-1 -- Update to 0.16.0 -- Use python_provide macro - -* Fri Jun 19 2015 Fedora Release Engineering - 0.15.1-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild - -* Tue Mar 31 2015 Orion Poplawski - 0.15.1-1 -- Update to 0.15.1 - -* Sun Jan 4 2015 Orion Poplawski - 0.14.1-1 -- Update to 0.14.1 - -* Wed Aug 20 2014 Kevin Fenzi - 0.14.0-5 -- Rebuild for rpm bug 1131892 - -* Mon Aug 18 2014 Fedora Release Engineering - 0.14.0-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild - -* Sun Jun 08 2014 Fedora Release Engineering - 0.14.0-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild - -* Sat May 10 2014 Orion Poplawski - 0.14-2 -- Rebuild with Python 3.4 - -* Tue May 6 2014 Orion Poplawski - 0.14-1 -- Update to 0.14 -- Do not use system python-six (bug #1046817) - -* Thu Feb 20 2014 Thomas Spura - 0.13.3-2 -- use python2 macros everywhere (Requested by Han Boetes) - -* Tue Feb 4 2014 Thomas Spura - 0.13.3-1 -- Update to 0.13.3 - -* Mon Dec 9 2013 Orion Poplwski - 0.13.2-1 -- Update to 0.13.2 - -* Fri Dec 06 2013 Nils Philippsen - 0.13.1-2 -- rebuild (suitesparse) - -* Sun Nov 17 2013 Orion Poplwski - 0.13.1-1 -- Update to 0.13.1 - -* Wed Oct 23 2013 Tomas Tomecek - 0.13.0-2 -- Update to 0.13.0 final - -* Tue Oct 15 2013 Orion Poplwski - 0.13.0-0.4.rc1 -- Update to 0.13.0rc1 - -* Tue Oct 01 2013 Tomas Tomecek - 0.13.0-0.3.b1 -- rebuilt with atlas 3.10 - -* Mon Sep 9 2013 Orion Poplwski - 0.13.0-0.2.b1 -- Unbundle python-six (bug #1005350) - -* Thu Aug 29 2013 Orion Poplwski - 0.13.0-0.1.b1 -- Update to 0.13.0b1 -- Drop patches applied upstream -- Fixup changelog and summary - -* Sun Aug 04 2013 Fedora Release Engineering - 0.12.0-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild - -* Tue Jul 30 2013 Tomas Tomecek - 0.12.0-4 -- Fix rpmlint warnings -- License update -- Add patch to use build_dir argument in build_extension - -* Wed May 15 2013 Orion Poplawski - 0.12.0-3 -- Remove old ufsparse references, use suitesparse -- Spec cleanup - -* Mon Apr 15 2013 Orion Poplawski - 0.12.0-2 -- Add patch to fix segfaul in test of sgeqrf - -* Wed Apr 10 2013 Orion Poplawski - 0.12.0-1 -- Update to 0.12.0 final -- No longer remove weave from python3 build - -* Sat Feb 16 2013 Orion Poplawski - 0.12.0-0.1.b1 -- Update to 0.12.0b1 -- Drop upstreamed linalg patch - -* Wed Feb 13 2013 Orion Poplawski - 0.11.0-4 -- Add patch from upstream to fix python3.3 issues in linalg routines - -* Tue Feb 12 2013 Orion Poplawski - 0.11.0-3 -- Disable python3 tests for now - -* Mon Oct 8 2012 Orion Poplawski - 0.11.0-2 -- Add requires python3-numpy, python3-f2py for python3-scipy (bug 863755) - -* Sun Sep 30 2012 Orion Poplawski - 0.11.0-1 -- Update to 0.11.0 final - -* Thu Aug 23 2012 Orion Poplawski - 0.11.0-0.1.rc2 -- Update to 0.11.0rc2 - -* Mon Aug 6 2012 Orion Poplawski - 0.10.1-4 -- Rebuild for python 3.3 - -* Fri Aug 3 2012 David Malcolm - 0.10.1-3 -- remove rhel logic from with_python3 conditional - -* Sat Jul 21 2012 Fedora Release Engineering - 0.10.1-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild - -* Fri Mar 16 2012 Orion Poplawski - 0.10.1-1 -- Update to 0.10.1 - -* Sat Jan 14 2012 Fedora Release Engineering - 0.10.0-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild - -* Mon Nov 14 2011 Orion Poplawski - 0.10.0-1 -- Update to 0.10.0 - -* Sat Sep 3 2011 Thomas Spura - 0.9.0-2 -- little cosmetic changes -- filter provides in python_sitearch - -* Fri Sep 02 2011 Andrew McNabb -- add python3 subpackage - -* Fri Apr 1 2011 Orion Poplawski - 0.9.0-1 -- Update to 0.9.0 -- Drop all stsci sources and patches, dropped from upstream -- Drop gcc and py27 patches fixed upstream -- Add %%check section to run tests - -* Wed Feb 09 2011 Fedora Release Engineering - 0.7.2-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild - -* Sat Jul 31 2010 Toshio Kuratomi - 0.7.2-3 -- Fix scipy build on python-2.7 - -* Thu Jul 22 2010 David Malcolm - 0.7.2-2 -- Rebuilt for https://fedoraproject.org/wiki/Features/Python_2.7/MassRebuild - -* Thu Jul 1 2010 Jef Spaleta - 0.7.2-1 -- New upstream release - -* Sun Apr 11 2010 Jef Spaleta - 0.7.1-3 -- Bump for rebuild against numpy 1.3 - -* Thu Apr 1 2010 Jef Spaleta - 0.7.1-2 -- Bump for rebuild against numpy 1.4.0 - -* Thu Dec 10 2009 Jon Ciesla - 0.7.1-1 -- Update to 0.7.1. - -* Sun Jul 26 2009 Fedora Release Engineering - 0.7.0-5 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild - -* Sun Jun 14 2009 Jef Spaleta - 0.7.0-4 -- Fix for gcc34 weave blitz bug #505379 - -* Tue Apr 7 2009 Jef Spaleta - 0.7.0-3 -- Add f2py requires to prepared for numpy packaging split - -* Sun Mar 1 2009 Jef Spaleta - 0.7.0-2 -- Patch for stsci image function syntax fix. - -* Thu Feb 26 2009 Jef Spaleta - 0.7.0-1 -- Update to final 0.7 release - -* Wed Feb 25 2009 Fedora Release Engineering - 0.7.0-0.3.b1 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild - -* Mon Dec 15 2008 Deji Akingunola - 0.7.0-0.2.b1 -- Rebuild for atlas-3.8.2 - -* Mon Dec 01 2008 Jef Spaleta - 0.7.0-0.1.b1 -- Update to latest beta which lists python 2.6 support - -* Sat Nov 29 2008 Ignacio Vazquez-Abrams - 0.6.0-8 -- Rebuild for Python 2.6 - -* Fri Oct 03 2008 Jef Spaleta - 0.6.0-7 -- fix the stsci fix - -* Thu Oct 02 2008 Jef Spaleta - 0.6.0-6 -- include missing setup files for stsci module - -* Tue Feb 19 2008 Fedora Release Engineering - 0.6.0-5 -- Autorebuild for GCC 4.3 - -* Fri Jan 04 2008 Jef Spaleta - 0.6.0-4 -- fix for egg-info file creation - -* Wed Oct 03 2007 Jef Spaleta - 0.6.0-3 -- include_dirs changes for ufsparse change in development - -* Tue Oct 02 2007 Jef Spaleta - 0.6.0-2 -- Fix licensing to match Fedora packaging guidance -- Remove unnecessary library deps - -* Tue Sep 25 2007 Jarrod Millman - 0.6.0-1 -- update to new upstream source -- update Summary, License, Url, and description -- added extra dependencies -- remove symlink since Lib has been renamed scipy - -* Tue Aug 21 2007 Jef Spaleta - 0.5.2.1-1 -- Update to new upstream source - -* Tue Aug 21 2007 Jef Spaleta - 0.5.2-3 -- fix licensing tag and bump for buildid rebuild - -* Wed Apr 18 2007 Jef Spaleta - 0.5.2-2.2 -- go back to using gfortran now that numpy is patched - -* Sat Apr 14 2007 Jef Spaleta - 0.5.2-2.1 -- minor correction for f77 usage - -* Sat Apr 14 2007 Jef Spaleta - 0.5.2-2 -- revert to f77 due to issue with numpy in development - -* Sat Apr 14 2007 Jef Spaleta - 0.5.2-1.1 -- remove arch specific optimizations - -* Wed Feb 21 2007 Jef Spaleta - 0.5.2-1 -- Update for new upstream release - -* Mon Dec 11 2006 Jef Spaleta - 0.5.1-5 -- Bump for rebuild against python 2.5 in devel tree - -* Sun Dec 3 2006 Jef Spaleta - 0.5.1-4 -- Minor adjustments to specfile for packaging guidelines. -- Changed buildrequires fftw version 3 from fftw2 - -* Sat Dec 2 2006 Jef Spaleta - 0.5.1-2 -- Updated spec for FE Packaging Guidelines and for upstream version 0.5.1 - -* Mon May 8 2006 Neal Becker - 0.4.8-4 -- Add BuildRequires gcc-c++ -- Add python-devel -- Add libstdc++ - -* Mon May 8 2006 Neal Becker - 0.4.8-3 -- Add BuildRequires gcc-gfortran - -* Sun May 7 2006 Neal Becker - 0.4.8-3 -- Add BuildRequires numpy - - -* Wed May 3 2006 Neal Becker - 0.4.8-2 -- Fix BuildRoot -- Add BuildRequires, Requires -- Test remove d1mach patch -- Fix defattr -- Add changelog -- Removed Prefix, Vendor -- Fix Source0 +* Thu Dec 01 2022 Charalampos Stratakis - 1.8.1-1 +- Initial package +- Fedora contributions by: + Antonio Trande + Bill Nottingham + Björn Esser + Charalampos Stratakis + Christian Dersch + David Malcolm + Deji Akingunola + Dennis Gilmore + Elliott Sales de Andrade + Ignacio Vazquez-Abrams + Igor Gnatenko + Iñaki Úcar + Jef Spaleta + Jesse Keating + Jitka Plesnikova + Jonathan Wakely + Jon Ciesla + Kalev Lember + Kevin Fenzi + Lumir Balhar + Mamoru TASAKA + Marcel Plch + Miro Hrončok + Nikola Forró + Nils Philippsen + Orion Poplawski + Peter Robinson + Petr Viktorin + Robert Kuska + Than Ngo + Thomas Spura + Tomas Tomecek + Toshio Kuratomi + Troy Dawson + Zbigniew Jędrzejewski-Szmek diff --git a/scipy-1.8.1-test_moments-benchmark.patch b/scipy-1.8.1-test_moments-benchmark.patch new file mode 100644 index 0000000..68bcc8d --- /dev/null +++ b/scipy-1.8.1-test_moments-benchmark.patch @@ -0,0 +1,150 @@ +diff --git a/benchmarks/benchmarks/stats.py b/benchmarks/benchmarks/stats.py +index 0f105b39..ed399f4d 100644 +--- a/benchmarks/benchmarks/stats.py ++++ b/benchmarks/benchmarks/stats.py +@@ -162,6 +162,33 @@ class InferentialStats(Benchmark): + stats.mstats.kruskal(self.a, self.b) + + ++# Benchmark data for the truncnorm stats() method. ++# The data in each row is: ++# a, b, mean, variance, skewness, excess kurtosis. Generated using ++# https://gist.github.com/WarrenWeckesser/636b537ee889679227d53543d333a720 ++truncnorm_cases = [[-20, -19, -19.052343945976656, 0.002725073018195613, ++ -1.9838693623377885, 5.871801893091683], ++ [-30, -29, -29.034401237736176, 0.0011806604886186853, ++ -1.9929615171469608, 5.943905539773037], ++ [-40, -39, -39.02560741993011, 0.0006548827702932775, ++ -1.9960847672775606, 5.968744357649675], ++ [39, 40, 39.02560741993011, 0.0006548827702932775, ++ 1.9960847672775606, 5.968744357649675]] ++truncnorm_cases = np.array(truncnorm_cases) ++ ++ ++class TruncnormStats(Benchmark): ++ param_names = ['case', 'moment'] ++ params = [list(range(len(truncnorm_cases))), ['m', 'v', 's', 'k']] ++ ++ def track_truncnorm_stats_error(self, case, moment): ++ result_indices = dict(zip(['m', 'v', 's', 'k'], range(2, 6))) ++ ref = truncnorm_cases[case, result_indices[moment]] ++ a, b = truncnorm_cases[case, 0:2] ++ res = stats.truncnorm(a, b).stats(moments=moment) ++ return np.abs((res - ref)/ref) ++ ++ + class DistributionsAll(Benchmark): + # all distributions are in this list. A conversion to a set is used to + # remove duplicates that appear more than once in either `distcont` or +diff --git a/scipy/stats/tests/test_distributions.py b/scipy/stats/tests/test_distributions.py +index d18ad6f3..a15a9301 100644 +--- a/scipy/stats/tests/test_distributions.py ++++ b/scipy/stats/tests/test_distributions.py +@@ -910,61 +910,52 @@ class TestTruncnorm: + assert_almost_equal(s, s0, decimal=decimal_s) + assert_almost_equal(k, k0) + +- @pytest.mark.xfail_on_32bit("reduced accuracy with 32bit platforms.") +- def test_moments(self): +- # Values validated by changing TRUNCNORM_TAIL_X so as to evaluate +- # using both the _norm_XXX() and _norm_logXXX() functions, and by +- # removing the _stats and _munp methods in truncnorm tp force +- # numerical quadrature. +- # For m,v,s,k expect k to have the largest error as it is +- # constructed from powers of lower moments +- +- self._test_moments_one_range(-30, 30, [0, 1, 0.0, 0.0]) +- self._test_moments_one_range(-10, 10, [0, 1, 0.0, 0.0]) +- self._test_moments_one_range(-3, 3, [0.0, 0.9733369246625415, +- 0.0, -0.1711144363977444]) +- self._test_moments_one_range(-2, 2, [0.0, 0.7737413035499232, +- 0.0, -0.6344632828703505]) +- +- self._test_moments_one_range(0, np.inf, [0.7978845608028654, +- 0.3633802276324186, +- 0.9952717464311565, +- 0.8691773036059725]) +- self._test_moments_one_range(-np.inf, 0, [-0.7978845608028654, +- 0.3633802276324186, +- -0.9952717464311565, +- 0.8691773036059725]) +- +- self._test_moments_one_range(-1, 3, [0.2827861107271540, +- 0.6161417353578292, +- 0.5393018494027878, +- -0.2058206513527461]) +- self._test_moments_one_range(-3, 1, [-0.2827861107271540, +- 0.6161417353578292, +- -0.5393018494027878, +- -0.2058206513527461]) +- +- self._test_moments_one_range(-10, -9, [-9.1084562880124764, +- 0.0114488058210104, +- -1.8985607337519652, +- 5.0733457094223553]) +- self._test_moments_one_range(-20, -19, [-19.0523439459766628, +- 0.0027250730180314, +- -1.9838694022629291, +- 5.8717850028287586]) +- self._test_moments_one_range(-30, -29, [-29.0344012377394698, +- 0.0011806603928891, +- -1.9930304534611458, +- 5.8854062968996566], +- decimal_s=6) +- self._test_moments_one_range(-40, -39, [-39.0256074199326264, +- 0.0006548826719649, +- -1.9963146354109957, +- 5.6167758371700494]) +- self._test_moments_one_range(39, 40, [39.0256074199326264, +- 0.0006548826719649, +- 1.9963146354109957, +- 5.6167758371700494]) ++ # Test data for the truncnorm stats() method. ++ # The data in each row is: ++ # a, b, mean, variance, skewness, excess kurtosis. Generated using ++ # https://gist.github.com/WarrenWeckesser/636b537ee889679227d53543d333a720 ++ _truncnorm_stats_data = [ ++ [-30, 30, ++ 0.0, 1.0, 0.0, 0.0], ++ [-10, 10, ++ 0.0, 1.0, 0.0, -1.4927521335810455e-19], ++ [-3, 3, ++ 0.0, 0.9733369246625415, 0.0, -0.17111443639774404], ++ [-2, 2, ++ 0.0, 0.7737413035499232, 0.0, -0.6344632828703505], ++ [0, np.inf, ++ 0.7978845608028654, ++ 0.3633802276324187, ++ 0.995271746431156, ++ 0.8691773036059741], ++ [-np.inf, 0, ++ -0.7978845608028654, ++ 0.3633802276324187, ++ -0.995271746431156, ++ 0.8691773036059741], ++ [-1, 3, ++ 0.282786110727154, ++ 0.6161417353578293, ++ 0.5393018494027877, ++ -0.20582065135274694], ++ [-3, 1, ++ -0.282786110727154, ++ 0.6161417353578293, ++ -0.5393018494027877, ++ -0.20582065135274694], ++ [-10, -9, ++ -9.108456288012409, ++ 0.011448805821636248, ++ -1.8985607290949496, ++ 5.0733461105025075], ++ ] ++ _truncnorm_stats_data = np.array(_truncnorm_stats_data) ++ ++ @pytest.mark.parametrize("case", _truncnorm_stats_data) ++ def test_moments(self, case): ++ a, b, m0, v0, s0, k0 = case ++ m, v, s, k = stats.truncnorm.stats(a, b, moments='mvsk') ++ assert_allclose([m, v, s, k], [m0, v0, s0, k0], atol=1e-17) + + def test_9902_moments(self): + m, v = stats.truncnorm.stats(0, np.inf, moments='mv')