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import openmpi-3.1.2-5.el8

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CentOS Sources 2019-05-07 06:33:22 -04:00 committed by Andrew Lukoshko
commit 9f12c9fc9e
8 changed files with 686 additions and 0 deletions
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1
.gitignore vendored Normal file
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SOURCES/openmpi-3.1.2.tar.bz2

1
.openmpi.metadata Normal file
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b93c3b6ece16064e95578ec104f0c695c47a9fc8 SOURCES/openmpi-3.1.2.tar.bz2

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Index: openmpi-3.1.2/orte/test/system/Makefile
===================================================================
--- openmpi-3.1.2.orig/orte/test/system/Makefile
+++ openmpi-3.1.2/orte/test/system/Makefile
@@ -21,4 +21,4 @@ pmixtool:
ortecc -o pmixtool pmixtool.c -lpmix
threads:
- ortecc -O0 -g -lpthread -lhwloc threads.c -o threads
+ ortecc -O2 -g -lpthread -lhwloc threads.c -o threads
Index: openmpi-3.1.2/orte/tools/orte-dvm/Makefile.in
===================================================================
--- openmpi-3.1.2.orig/orte/tools/orte-dvm/Makefile.in
+++ openmpi-3.1.2/orte/tools/orte-dvm/Makefile.in
@@ -558,7 +558,7 @@ CCAS = @CCAS@
CCASDEPMODE = @CCASDEPMODE@
CCASFLAGS = @CCASFLAGS@
CCDEPMODE = @CCDEPMODE@
-CFLAGS = $(CFLAGS_WITHOUT_OPTFLAGS) $(DEBUGGER_CFLAGS)
+CFLAGS = @CFLAGS@
CFLAGS_WITHOUT_OPTFLAGS = @CFLAGS_WITHOUT_OPTFLAGS@
CLEANFILES = @CLEANFILES@
CONFIGURE_DEPENDENCIES = @CONFIGURE_DEPENDENCIES@
Index: openmpi-3.1.2/orte/tools/prun/Makefile.in
===================================================================
--- openmpi-3.1.2.orig/orte/tools/prun/Makefile.in
+++ openmpi-3.1.2/orte/tools/prun/Makefile.in
@@ -558,7 +558,7 @@ CCAS = @CCAS@
CCASDEPMODE = @CCASDEPMODE@
CCASFLAGS = @CCASFLAGS@
CCDEPMODE = @CCDEPMODE@
-CFLAGS = $(CFLAGS_WITHOUT_OPTFLAGS) $(DEBUGGER_CFLAGS)
+CFLAGS = @CFLAGS@
CFLAGS_WITHOUT_OPTFLAGS = @CFLAGS_WITHOUT_OPTFLAGS@
CLEANFILES = @CLEANFILES@
CONFIGURE_DEPENDENCIES = @CONFIGURE_DEPENDENCIES@
Index: openmpi-3.1.2/orte/Makefile.in
===================================================================
--- openmpi-3.1.2.orig/orte/Makefile.in
+++ openmpi-3.1.2/orte/Makefile.in
@@ -2162,7 +2162,7 @@ AM_LFLAGS = -Porte_util_hostfile_
liborted_mpir_la_SOURCES = \
orted/orted_submit.c
-liborted_mpir_la_CFLAGS = $(CFLAGS_WITHOUT_OPTFLAGS) $(DEBUGGER_CFLAGS)
+liborted_mpir_la_CFLAGS = $(CFLAGS)
all: all-recursive
.SUFFIXES:
Index: openmpi-3.1.2/ompi/debuggers/Makefile.in
===================================================================
--- openmpi-3.1.2.orig/ompi/debuggers/Makefile.in
+++ openmpi-3.1.2/ompi/debuggers/Makefile.in
@@ -756,7 +756,7 @@ CCDEPMODE = @CCDEPMODE@
# may already have debugging and/or optimization flags). We use
# post-processed forms of the CFLAGS in the library targets down
# below.
-CFLAGS = $(CFLAGS_WITHOUT_OPTFLAGS) $(DEBUGGER_CFLAGS)
+CFLAGS = @CFLAGS@
CFLAGS_WITHOUT_OPTFLAGS = @CFLAGS_WITHOUT_OPTFLAGS@
CLEANFILES = @CLEANFILES@
CONFIGURE_DEPENDENCIES = @CONFIGURE_DEPENDENCIES@
@@ -1984,7 +1984,7 @@ common = ompi_common_dll_defs.h ompi_com
# MPI message queue DLL
libompi_dbg_msgq_la_SOURCES = ompi_msgq_dll.c ompi_msgq_dll_defs.h $(common)
-libompi_dbg_msgq_la_CFLAGS = -g
+libompi_dbg_msgq_la_CFLAGS = -O2 -g
libompi_dbg_msgq_la_LDFLAGS = -module -avoid-version
# These are checks for the padding on predefined MPI object types.
Index: openmpi-3.1.2/ompi/mpi/fortran/use-mpi-tkr/Makefile.in
===================================================================
--- openmpi-3.1.2.orig/ompi/mpi/fortran/use-mpi-tkr/Makefile.in
+++ openmpi-3.1.2/ompi/mpi/fortran/use-mpi-tkr/Makefile.in
@@ -1809,7 +1809,7 @@ ompi__v_GEN_0 = @echo " GENERATE" $@;
# current directory) because it is generated.
@OMPI_BUILD_FORTRAN_USEMPI_TKR_BINDINGS_TRUE@AM_FCFLAGS = -I$(top_builddir)/ompi/include -I$(top_srcdir)/ompi/include \
@OMPI_BUILD_FORTRAN_USEMPI_TKR_BINDINGS_TRUE@ $(OMPI_FC_MODULE_FLAG). -I$(srcdir) -I. \
-@OMPI_BUILD_FORTRAN_USEMPI_TKR_BINDINGS_TRUE@ -I$(top_builddir)/ompi/mpi/fortran/use-mpi-tkr $(FCFLAGS_f90)
+@OMPI_BUILD_FORTRAN_USEMPI_TKR_BINDINGS_TRUE@ -I$(top_builddir)/ompi/mpi/fortran/use-mpi-tkr $(FCFLAGS) $(FCFLAGS_f90)
# Do different things if the top-level configure decided that we're
@@ -1969,13 +1969,13 @@ distclean-compile:
$(AM_V_PPFC)$(LTPPFCCOMPILE) -c -o $@ $<
.f90.o:
- $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) $<
+ $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS) $(FCFLAGS_f90) $<
.f90.obj:
- $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) `$(CYGPATH_W) '$<'`
+ $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS) $(FCFLAGS_f90) `$(CYGPATH_W) '$<'`
.f90.lo:
- $(AM_V_FC)$(LTFCCOMPILE) -c -o $@ $(FCFLAGS_f90) $<
+ $(AM_V_FC)$(LTFCCOMPILE) -c -o $@ $(FCFLAGS) $(FCFLAGS_f90) $<
mostlyclean-libtool:
-rm -f *.lo
Index: openmpi-3.1.2/ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile.in
===================================================================
--- openmpi-3.1.2.orig/ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile.in
+++ openmpi-3.1.2/ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile.in
@@ -1783,7 +1783,7 @@ ompi__v_GEN_0 = @echo " GENERATE" $@;
# mpi" MPI bindings.
@OMPI_BUILD_FORTRAN_USEMPI_IGNORE_TKR_BINDINGS_TRUE@AM_CPPFLAGS = -DOMPI_PROFILE_LAYER=0 -DOMPI_COMPILING_FORTRAN_WRAPPERS=1
@OMPI_BUILD_FORTRAN_USEMPI_IGNORE_TKR_BINDINGS_TRUE@AM_FCFLAGS = -I$(top_builddir)/ompi/include -I$(top_srcdir)/ompi/include \
-@OMPI_BUILD_FORTRAN_USEMPI_IGNORE_TKR_BINDINGS_TRUE@ -I$(top_builddir) -I$(top_srcdir) $(FCFLAGS_f90)
+@OMPI_BUILD_FORTRAN_USEMPI_IGNORE_TKR_BINDINGS_TRUE@ -I$(top_builddir) -I$(top_srcdir) $(FCFLAGS) $(FCFLAGS_f90)
@OMPI_BUILD_FORTRAN_USEMPI_IGNORE_TKR_BINDINGS_TRUE@lib_LTLIBRARIES = lib@OMPI_LIBMPI_NAME@_usempi_ignore_tkr.la
@OMPI_BUILD_FORTRAN_USEMPI_IGNORE_TKR_BINDINGS_TRUE@lib@OMPI_LIBMPI_NAME@_usempi_ignore_tkr_la_SOURCES = \
@@ -1904,13 +1904,13 @@ distclean-compile:
$(AM_V_PPFC)$(LTPPFCCOMPILE) -c -o $@ $<
.f90.o:
- $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) $<
+ $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS) $(FCFLAGS_f90) $<
.f90.obj:
- $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) `$(CYGPATH_W) '$<'`
+ $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS) $(FCFLAGS_f90) `$(CYGPATH_W) '$<'`
.f90.lo:
- $(AM_V_FC)$(LTFCCOMPILE) -c -o $@ $(FCFLAGS_f90) $<
+ $(AM_V_FC)$(LTFCCOMPILE) -c -o $@ $(FCFLAGS) $(FCFLAGS_f90) $<
mostlyclean-libtool:
-rm -f *.lo
Index: openmpi-3.1.2/ompi/mpi/fortran/mpiext/Makefile.in
===================================================================
--- openmpi-3.1.2.orig/ompi/mpi/fortran/mpiext/Makefile.in
+++ openmpi-3.1.2/ompi/mpi/fortran/mpiext/Makefile.in
@@ -1723,7 +1723,7 @@ ucx_STATIC_LIBS = @ucx_STATIC_LIBS@
@OMPI_BUILD_FORTRAN_USEMPI_OR_USEMPIF08_EXT_TRUE@AM_FCFLAGS = -I$(top_builddir)/ompi/include -I$(top_srcdir)/ompi/include \
@OMPI_BUILD_FORTRAN_USEMPI_OR_USEMPIF08_EXT_TRUE@ $(OMPI_FC_MODULE_FLAG)$(top_builddir)/ompi/mpi/fortran/base \
@OMPI_BUILD_FORTRAN_USEMPI_OR_USEMPIF08_EXT_TRUE@ $(OMPI_FC_MODULE_FLAG)$(top_builddir)/ompi/mpi/fortran/use-mpi-f08/mod \
-@OMPI_BUILD_FORTRAN_USEMPI_OR_USEMPIF08_EXT_TRUE@ -I$(top_srcdir) $(FCFLAGS_f90)
+@OMPI_BUILD_FORTRAN_USEMPI_OR_USEMPIF08_EXT_TRUE@ -I$(top_srcdir) $(FCFLAGS) $(FCFLAGS_f90)
@OMPI_BUILD_FORTRAN_USEMPI_OR_USEMPIF08_EXT_TRUE@flibs = $(am__append_1) \
@OMPI_BUILD_FORTRAN_USEMPI_OR_USEMPIF08_EXT_TRUE@ $(am__append_2)
Index: openmpi-3.1.2/ompi/mpi/fortran/use-mpi-f08/Makefile.in
===================================================================
--- openmpi-3.1.2.orig/ompi/mpi/fortran/use-mpi-f08/Makefile.in
+++ openmpi-3.1.2/ompi/mpi/fortran/use-mpi-f08/Makefile.in
@@ -2870,7 +2870,7 @@ ompi__v_GEN_0 = @echo " GENERATE" $@;
@OMPI_BUILD_FORTRAN_USEMPIF08_BINDINGS_TRUE@ -I$(top_srcdir)/ompi/include \
@OMPI_BUILD_FORTRAN_USEMPIF08_BINDINGS_TRUE@ $(OMPI_FC_MODULE_FLAG)$(top_builddir)/ompi/$(OMPI_FORTRAN_USEMPI_DIR) \
@OMPI_BUILD_FORTRAN_USEMPIF08_BINDINGS_TRUE@ $(OMPI_FC_MODULE_FLAG)mod \
-@OMPI_BUILD_FORTRAN_USEMPIF08_BINDINGS_TRUE@ -I$(top_srcdir) $(FCFLAGS_f90)
+@OMPI_BUILD_FORTRAN_USEMPIF08_BINDINGS_TRUE@ -I$(top_srcdir) $(FCFLAGS) $(FCFLAGS_f90)
@OMPI_BUILD_FORTRAN_USEMPIF08_BINDINGS_TRUE@MOSTLYCLEANFILES = *.mod
@OMPI_BUILD_FORTRAN_USEMPIF08_BINDINGS_TRUE@lib_LTLIBRARIES = lib@OMPI_LIBMPI_NAME@_usempif08.la
@@ -4444,13 +4444,13 @@ distclean-compile:
@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $<
.f90.o:
- $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) $<
+ $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS) $(FCFLAGS_f90) $<
.f90.obj:
- $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS_f90) `$(CYGPATH_W) '$<'`
+ $(AM_V_FC)$(FCCOMPILE) -c -o $@ $(FCFLAGS) $(FCFLAGS_f90) `$(CYGPATH_W) '$<'`
.f90.lo:
- $(AM_V_FC)$(LTFCCOMPILE) -c -o $@ $(FCFLAGS_f90) $<
+ $(AM_V_FC)$(LTFCCOMPILE) -c -o $@ $(FCFLAGS) $(FCFLAGS_f90) $<
mostlyclean-libtool:
-rm -f *.lo
Index: openmpi-3.1.2/ompi/mpi/fortran/use-mpi-f08/mod/Makefile.in
===================================================================
--- openmpi-3.1.2.orig/ompi/mpi/fortran/use-mpi-f08/mod/Makefile.in
+++ openmpi-3.1.2/ompi/mpi/fortran/use-mpi-f08/mod/Makefile.in
@@ -1737,7 +1737,7 @@ ompi__v_GEN_0 = @echo " GENERATE" $@;
@OMPI_BUILD_FORTRAN_USEMPIF08_BINDINGS_TRUE@ -I$(top_srcdir)/ompi/include \
@OMPI_BUILD_FORTRAN_USEMPIF08_BINDINGS_TRUE@ $(OMPI_FC_MODULE_FLAG)$(top_builddir)/ompi/$(OMPI_FORTRAN_USEMPI_DIR) \
@OMPI_BUILD_FORTRAN_USEMPIF08_BINDINGS_TRUE@ $(OMPI_FC_MODULE_FLAG). \
-@OMPI_BUILD_FORTRAN_USEMPIF08_BINDINGS_TRUE@ -I$(top_srcdir) $(FCFLAGS_f90)
+@OMPI_BUILD_FORTRAN_USEMPIF08_BINDINGS_TRUE@ -I$(top_srcdir) $(FCFLAGS) $(FCFLAGS_f90)
@OMPI_BUILD_FORTRAN_USEMPIF08_BINDINGS_TRUE@MOSTLYCLEANFILES = *.mod

6
SOURCES/macros.openmpi Normal file
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@ -0,0 +1,6 @@
%_openmpi_load \
. /etc/profile.d/modules.sh; \
module load mpi/openmpi-%{_arch};
%_openmpi_unload \
. /etc/profile.d/modules.sh; \
module unload mpi/openmpi-%{_arch};

103
SOURCES/openmpi-2.1.1-disable-fifo-test.patch Normal file
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@ -0,0 +1,103 @@
--- openmpi-2.1.1/test/class/Makefile.am 2017-05-10 08:41:36.000000000 -0700
+++ openmpi-2.1.1/test/class/Makefile.am.new 2017-08-24 09:07:12.539374461 -0700
@@ -95,11 +95,14 @@
$(top_builddir)/test/support/libsupport.a
opal_lifo_DEPENDENCIES = $(opal_lifo_LDADD)
-opal_fifo_SOURCES = opal_fifo.c
-opal_fifo_LDADD = \
- $(top_builddir)/opal/lib@OPAL_LIB_PREFIX@open-pal.la \
- $(top_builddir)/test/support/libsupport.a
-opal_fifo_DEPENDENCIES = $(opal_fifo_LDADD)
+# Disabled due to:
+# https://github.com/open-mpi/ompi/issues/2526
+# https://github.com/open-mpi/ompi/issues/2966
+#opal_fifo_SOURCES = opal_fifo.c
+#opal_fifo_LDADD = \
+# $(top_builddir)/opal/lib@OPAL_LIB_PREFIX@open-pal.la \
+# $(top_builddir)/test/support/libsupport.a
+#opal_fifo_DEPENDENCIES = $(opal_fifo_LDADD)
clean-local:
rm -f opal_bitmap_test_out.txt opal_hash_table_test_out.txt opal_proc_table_test_out.txt
--- openmpi-2.1.1/test/class/Makefile.in 2017-05-10 09:01:13.000000000 -0700
+++ openmpi-2.1.1/test/class/Makefile.in.new 2017-08-24 09:07:12.539374461 -0700
@@ -115,7 +115,7 @@
opal_hash_table$(EXEEXT) opal_proc_table$(EXEEXT) \
opal_tree$(EXEEXT) opal_list$(EXEEXT) \
opal_value_array$(EXEEXT) opal_pointer_array$(EXEEXT) \
- opal_lifo$(EXEEXT) opal_fifo$(EXEEXT)
+ opal_lifo$(EXEEXT)
subdir = test/class
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
am__aclocal_m4_deps = $(top_srcdir)/config/c_get_alignment.m4 \
@@ -411,8 +411,6 @@
am__v_lt_1 =
am_opal_bitmap_OBJECTS = opal_bitmap.$(OBJEXT)
opal_bitmap_OBJECTS = $(am_opal_bitmap_OBJECTS)
-am_opal_fifo_OBJECTS = opal_fifo.$(OBJEXT)
-opal_fifo_OBJECTS = $(am_opal_fifo_OBJECTS)
am_opal_hash_table_OBJECTS = opal_hash_table.$(OBJEXT)
opal_hash_table_OBJECTS = $(am_opal_hash_table_OBJECTS)
am_opal_lifo_OBJECTS = opal_lifo.$(OBJEXT)
@@ -462,12 +460,12 @@
am__v_CCLD_0 = @echo " CCLD " $@;
am__v_CCLD_1 =
SOURCES = $(ompi_rb_tree_SOURCES) $(opal_bitmap_SOURCES) \
- $(opal_fifo_SOURCES) $(opal_hash_table_SOURCES) \
+ $(opal_hash_table_SOURCES) \
$(opal_lifo_SOURCES) $(opal_list_SOURCES) \
$(opal_pointer_array_SOURCES) $(opal_proc_table_SOURCES) \
$(opal_tree_SOURCES) $(opal_value_array_SOURCES)
DIST_SOURCES = $(ompi_rb_tree_SOURCES) $(opal_bitmap_SOURCES) \
- $(opal_fifo_SOURCES) $(opal_hash_table_SOURCES) \
+ $(opal_hash_table_SOURCES) \
$(opal_lifo_SOURCES) $(opal_list_SOURCES) \
$(opal_pointer_array_SOURCES) $(opal_proc_table_SOURCES) \
$(opal_tree_SOURCES) $(opal_value_array_SOURCES)
@@ -1900,12 +1898,6 @@
$(top_builddir)/test/support/libsupport.a
opal_lifo_DEPENDENCIES = $(opal_lifo_LDADD)
-opal_fifo_SOURCES = opal_fifo.c
-opal_fifo_LDADD = \
- $(top_builddir)/opal/lib@OPAL_LIB_PREFIX@open-pal.la \
- $(top_builddir)/test/support/libsupport.a
-
-opal_fifo_DEPENDENCIES = $(opal_fifo_LDADD)
all: all-am
.SUFFIXES:
@@ -1957,10 +1949,6 @@
@rm -f opal_bitmap$(EXEEXT)
$(AM_V_CCLD)$(LINK) $(opal_bitmap_OBJECTS) $(opal_bitmap_LDADD) $(LIBS)
-opal_fifo$(EXEEXT): $(opal_fifo_OBJECTS) $(opal_fifo_DEPENDENCIES) $(EXTRA_opal_fifo_DEPENDENCIES)
- @rm -f opal_fifo$(EXEEXT)
- $(AM_V_CCLD)$(LINK) $(opal_fifo_OBJECTS) $(opal_fifo_LDADD) $(LIBS)
-
opal_hash_table$(EXEEXT): $(opal_hash_table_OBJECTS) $(opal_hash_table_DEPENDENCIES) $(EXTRA_opal_hash_table_DEPENDENCIES)
@rm -f opal_hash_table$(EXEEXT)
$(AM_V_CCLD)$(LINK) $(opal_hash_table_OBJECTS) $(opal_hash_table_LDADD) $(LIBS)
@@ -1997,7 +1985,6 @@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/ompi_rb_tree.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/opal_bitmap.Po@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/opal_fifo.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/opal_hash_table.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/opal_lifo.Po@am__quote@
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/opal_list.Po@am__quote@
@@ -2291,13 +2278,6 @@
$(am__check_pre) $(LOG_DRIVER) --test-name "$$f" \
--log-file $$b.log --trs-file $$b.trs \
$(am__common_driver_flags) $(AM_LOG_DRIVER_FLAGS) $(LOG_DRIVER_FLAGS) -- $(LOG_COMPILE) \
- "$$tst" $(AM_TESTS_FD_REDIRECT)
-opal_fifo.log: opal_fifo$(EXEEXT)
- @p='opal_fifo$(EXEEXT)'; \
- b='opal_fifo'; \
- $(am__check_pre) $(LOG_DRIVER) --test-name "$$f" \
- --log-file $$b.log --trs-file $$b.trs \
- $(am__common_driver_flags) $(AM_LOG_DRIVER_FLAGS) $(LOG_DRIVER_FLAGS) -- $(LOG_COMPILE) \
"$$tst" $(AM_TESTS_FD_REDIRECT)
.test.log:
@p='$<'; \

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SOURCES/openmpi.module.in Normal file
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@ -0,0 +1,21 @@
#%Module 1.0
#
# OpenMPI module for use with 'environment-modules' package:
#
conflict mpi
prepend-path PATH @LIBDIR@/bin
prepend-path LD_LIBRARY_PATH @LIBDIR@/lib
prepend-path PKG_CONFIG_PATH @LIBDIR@/lib/pkgconfig
prepend-path MANPATH @MANDIR@
setenv MPI_BIN @LIBDIR@/bin
setenv MPI_SYSCONFIG @ETCDIR@
setenv MPI_FORTRAN_MOD_DIR @FMODDIR@
setenv MPI_INCLUDE @INCDIR@
setenv MPI_LIB @LIBDIR@/lib
setenv MPI_MAN @MANDIR@
setenv MPI_PYTHON_SITEARCH @PYSITEARCH@
setenv MPI_PYTHON2_SITEARCH @PYSITEARCH@
setenv MPI_PYTHON3_SITEARCH @PYSITEARCH@
setenv MPI_COMPILER @COMPILER@
setenv MPI_SUFFIX @SUFFIX@
setenv MPI_HOME @LIBDIR@

1
SOURCES/openmpi.pth.py3 Normal file
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@ -0,0 +1 @@
import sys, os; s = os.getenv('MPI_PYTHON3_SITEARCH'); s and (s in sys.path or sys.path.append(s))

366
SPECS/openmpi.spec Normal file
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@ -0,0 +1,366 @@
%global _hardened_build 1
# We only compile with gcc, but other people may want other compilers.
# Set the compiler here.
%global opt_cc gcc
# Optional CFLAGS to use with the specific compiler...gcc doesn't need any,
# so uncomment and define to use
#global opt_cflags
%global opt_cxx g++
#global opt_cxxflags
%global opt_f77 gfortran
#global opt_fflags
%global opt_fc gfortran
#global opt_fcflags
# Optional name suffix to use...we leave it off when compiling with gcc, but
# for other compiled versions to install side by side, it will need a
# suffix in order to keep the names from conflicting.
#global _cc_name_suffix -gcc
%global macrosdir %(d=%{_rpmconfigdir}/macros.d; [ -d $d ] || d=%{_sysconfdir}/rpm; echo $d)
Name: openmpi%{?_cc_name_suffix}
Version: 3.1.2
Release: 5%{?dist}
Summary: Open Message Passing Interface
Group: Development/Libraries
License: BSD and MIT and Romio
URL: http://www.open-mpi.org/
# We can't use %%{name} here because of _cc_name_suffix
Source0: https://www.open-mpi.org/software/ompi/v3.1/downloads/openmpi-%{version}.tar.bz2
Source1: openmpi.module.in
Source2: openmpi.pth.py3
Source3: macros.openmpi
# Only for ppc64le
# https://github.com/open-mpi/ompi/issues/2526
# https://github.com/open-mpi/ompi/issues/2966
Patch0: openmpi-2.1.1-disable-fifo-test.patch
Patch1: fix-optimization-flags.patch
BuildRequires: gcc-gfortran
%ifnarch s390 s390x
BuildRequires: valgrind-devel
%endif
%ifnarch s390 s390x %{arm}
BuildRequires: libibverbs-devel >= 1.1.3, opensm-devel >= 3.3.21
BuildRequires: librdmacm-devel rdma-core-devel
%endif
# Doesn't compile:
# vt_dyn.cc:958:28: error: 'class BPatch_basicBlockLoop' has no member named 'getLoopHead'
# loop->getLoopHead()->getStartAddress(), loop_stmts );
#BuildRequires: dyninst-devel
BuildRequires: hwloc-devel
# So configure can find lstopo
BuildRequires: hwloc-gui
BuildRequires: java-devel
%ifnarch s390 s390x
BuildRequires: libfabric-devel
BuildRequires: papi-devel
%endif
BuildRequires: perl-generators
BuildRequires: perl(Getopt::Long)
BuildRequires: pmix-devel
%ifarch x86_64
BuildRequires: libpsm2-devel
%endif
BuildRequires: torque-devel
BuildRequires: zlib-devel
BuildRequires: rpm-mpi-hooks
BuildRequires: libevent-devel >= 2.0.22
Provides: mpi
Requires: environment(modules)
# openmpi currently requires ssh to run
# https://svn.open-mpi.org/trac/ompi/ticket/4228
Requires: openssh-clients
Requires: libevent >= 2.0.22
# Private openmpi libraries
%global __provides_exclude_from %{_libdir}/openmpi/lib/(lib(mca|ompi|open-(pal|rte|trace))|openmpi/).*.so
%global __requires_exclude lib(mca|ompi|open-(pal|rte|trace)|vt).*
%description
Open MPI is an open source, freely available implementation of both the
MPI-1 and MPI-2 standards, combining technologies and resources from
several other projects (FT-MPI, LA-MPI, LAM/MPI, and PACX-MPI) in
order to build the best MPI library available. A completely new MPI-2
compliant implementation, Open MPI offers advantages for system and
software vendors, application developers, and computer science
researchers. For more information, see http://www.open-mpi.org/ .
%package devel
Summary: Development files for openmpi
Group: Development/Libraries
Requires: %{name} = %{version}-%{release}, gcc-gfortran
Provides: mpi-devel
Requires: rpm-mpi-hooks
%description devel
Contains development headers and libraries for openmpi.
%package java
Summary: Java library
Group: Development/Libraries
Requires: %{name} = %{version}-%{release}
Requires: java-headless
%description java
OpenMPI Java library.
%package java-devel
Summary: Java development files for openmpi
Group: Development/Libraries
Requires: %{name}-java = %{version}-%{release}
Requires: java-devel
%description java-devel
Contains development wrapper for compiling Java with openmpi.
# We set this to for convenience, since this is the unique dir we use for this
# particular package, version, compiler
%global namearch openmpi-%{_arch}%{?_cc_name_suffix}
%package -n python3-openmpi
Summary: OpenMPI support for Python 3
Group: Development/Libraries
BuildRequires: python3-devel
Requires: %{name} = %{version}-%{release}
Provides: python-openmpi
%description -n python3-openmpi
OpenMPI support for Python 3.
%prep
%setup -q -n openmpi-%{version}
%ifarch ppc64le
%patch0 -p1
%endif
%patch1 -p1
%build
%set_build_flags
./configure --prefix=%{_libdir}/%{name} \
--mandir=%{_mandir}/%{namearch} \
--includedir=%{_includedir}/%{namearch} \
--sysconfdir=%{_sysconfdir}/%{namearch} \
--disable-silent-rules \
--enable-builtin-atomics \
--enable-mpi-thread-multiple \
%ifnarch %{power64}
--enable-mpi-cxx \
%endif
--enable-mpi-java \
--enable-mpi-fortran=all \
--enable-cxx-exceptions \
--with-sge \
%ifnarch s390 s390x
--with-valgrind \
--enable-memchecker \
%endif
--with-hwloc=external \
--with-pmix=external \
--with-libevent=external \
CC=%{opt_cc} CXX=%{opt_cxx} FC=%{opt_fc} \
LDFLAGS="%{build_ldflags}" \
CFLAGS="%{?opt_cflags}%{!?opt_cflags:$RPM_OPT_FLAGS}" \
CXXFLAGS="%{?opt_cxxflags}%{!?opt_cxxflags:$RPM_OPT_FLAGS}" \
FCFLAGS="%{?opt_fcflags}%{!?opt_fcflags:$RPM_OPT_FLAGS}" \
--with-contrib-vt-flags='CXXFLAGS="-I%{_includedir}/dyninst -L%{_libdir}/dyninst"'
make %{?_smp_mflags} V=1
%install
make install DESTDIR=%{buildroot}
find %{buildroot}%{_libdir}/%{name}/lib -name \*.la | xargs rm
find %{buildroot}%{_mandir}/%{namearch} -type f | xargs gzip -9
ln -s mpicc.1.gz %{buildroot}%{_mandir}/%{namearch}/man1/mpiCC.1.gz
# Remove dangling symlink
rm %{buildroot}%{_mandir}/%{namearch}/man1/mpiCC.1
mkdir %{buildroot}%{_mandir}/%{namearch}/man{2,4,5,6,8,9,n}
# Make the environment-modules file
mkdir -p %{buildroot}%{_sysconfdir}/modulefiles/mpi
# Since we're doing our own substitution here, use our own definitions.
sed 's#@LIBDIR@#%{_libdir}/%{name}#;
s#@ETCDIR@#%{_sysconfdir}/%{namearch}#;
s#@FMODDIR@#%{_fmoddir}/%{name}#;
s#@INCDIR@#%{_includedir}/%{namearch}#;
s#@MANDIR@#%{_mandir}/%{namearch}#;
s#@PYSITEARCH@#%{python3_sitearch}/%{name}#;
s#@COMPILER@#openmpi-%{_arch}%{?_cc_name_suffix}#;
s#@SUFFIX@#%{?_cc_name_suffix}_openmpi#' \
<%{SOURCE1} \
>%{buildroot}%{_sysconfdir}/modulefiles/mpi/%{namearch}
# make the rpm config file
install -Dpm 644 %{SOURCE3} %{buildroot}/%{macrosdir}/macros.%{namearch}
# Link the fortran module to proper location
mkdir -p %{buildroot}%{_fmoddir}/%{name}
for mod in %{buildroot}%{_libdir}/%{name}/lib/*.mod
do
modname=$(basename $mod)
ln -s ../../../%{name}/lib/${modname} %{buildroot}/%{_fmoddir}/%{name}/
done
# Link the pkgconfig files into the main namespace as well
mkdir -p %{buildroot}%{_libdir}/pkgconfig
cd %{buildroot}%{_libdir}/pkgconfig
ln -s ../%{name}/lib/pkgconfig/*.pc .
cd -
# Remove extraneous wrapper link libraries (bug 814798)
sed -i -e s/-ldl// -e s/-lhwloc// \
%{buildroot}%{_libdir}/%{name}/share/openmpi/*-wrapper-data.txt
# install .pth files
mkdir -p %{buildroot}/%{python3_sitearch}/%{name}
install -pDm0644 %{SOURCE2} %{buildroot}/%{python3_sitearch}/openmpi.pth
%check
make check
%files
%license LICENSE
%dir %{_libdir}/%{name}
%dir %{_sysconfdir}/%{namearch}
%dir %{_libdir}/%{name}/bin
%dir %{_libdir}/%{name}/lib
%dir %{_libdir}/%{name}/lib/openmpi
%dir %{_mandir}/%{namearch}
%dir %{_mandir}/%{namearch}/man*
%config(noreplace) %{_sysconfdir}/%{namearch}/*
%{_libdir}/%{name}/bin/*.pl
%{_libdir}/%{name}/bin/mpi[er]*
%{_libdir}/%{name}/bin/ompi*
%{_libdir}/%{name}/bin/orte[-dr_]*
%{_libdir}/%{name}/bin/osh*
%{_libdir}/%{name}/bin/shmem*
%{_libdir}/%{name}/bin/prun
%{_libdir}/%{name}/lib/*.so.*
%{_mandir}/%{namearch}/man1/*
%{_mandir}/%{namearch}/man7/*
%{_libdir}/%{name}/lib/openmpi/*
%{_sysconfdir}/modulefiles/mpi/
%dir %{_libdir}/%{name}/share
%dir %{_libdir}/%{name}/share/openmpi
%{_libdir}/%{name}/share/openmpi/amca-param-sets
%{_libdir}/%{name}/share/openmpi/help*.txt
%ifnarch s390 %{arm}
%{_libdir}/%{name}/share/openmpi/mca-btl-openib-device-params.ini
%endif
%files devel
%dir %{_includedir}/%{namearch}
%{_libdir}/%{name}/bin/mpi[cCf]*
%{_libdir}/%{name}/bin/opal_*
%{_libdir}/%{name}/bin/orte[cCf]*
%{_libdir}/%{name}/bin/osh[cf]*
%{_libdir}/%{name}/bin/shmem[cf]*
%{_includedir}/%{namearch}/*
%{_fmoddir}/%{name}/
%{_libdir}/%{name}/lib/*.so
%{_libdir}/%{name}/lib/*.mod
%{_libdir}/%{name}/lib/pkgconfig/
%{_libdir}/pkgconfig/*.pc
%{_mandir}/%{namearch}/man1/mpi[cCf]*
%{_mandir}/%{namearch}/man1/osh[cCf]*
%{_mandir}/%{namearch}/man1/shmem[cCf]*
%{_mandir}/%{namearch}/man1/opal_*
%{_mandir}/%{namearch}/man3/*
%{_libdir}/%{name}/share/openmpi/openmpi-valgrind.supp
%{_libdir}/%{name}/share/openmpi/*-wrapper-data.txt
%{macrosdir}/macros.%{namearch}
%files java
%{_libdir}/%{name}/lib/mpi.jar
%files java-devel
%{_libdir}/%{name}/bin/mpijavac
%{_libdir}/%{name}/bin/mpijavac.pl
# Currently this only contaings openmpi/javadoc
%{_libdir}/%{name}/share/doc/
%{_mandir}/%{namearch}/man1/mpijavac.1.gz
%files -n python3-openmpi
%dir %{python3_sitearch}/%{name}
%{python3_sitearch}/openmpi.pth
%changelog
* Tue Sep 25 2018 Jarod Wilson <jarod@redhat.com> - 3.1.2-5
- Update BR: opensm-devel min version and rebuild against opensm 3.3.21
- Resolves: rhbz#1630653
* Mon Sep 24 2018 Jarod Wilson <jarod@redhat.com> - 3.1.2-4
- Further tweaks to compile/linker flag usage
- Related: rhbz#1624157
- Move modulefiles under /etc like our other suppored mpi providers
- Resolves: rhbz#1632399
* Tue Sep 18 2018 Jarod Wilson <jarod@redhat.com> - 3.1.2-3
- Undo stripping/ignoring of distro-provided optimization flags
- Related: rhbz#1624157
* Wed Sep 12 2018 Jarod Wilson <jarod@redhat.com> - 3.1.2-2
- Additional tweaks to module paths, fix openmpi-devel R
- Related: rhbz#1623441
* Wed Sep 12 2018 Jarod Wilson <jarod@redhat.com> - 3.1.2-1
- Update to upstream 3.1.2 bug fix release
- Fix some paths in module file, strip out python2 bits
- Related: rhbz#1623441
* Thu Aug 30 2018 Jarod Wilson <jarod@redhat.com> - 3.1.1-2
- Bump and rebuild for autogen rpmbuild library dependency fixes
- Related: rhbz#1623441
* Mon Jul 02 2018 Jarod Wilson <jarod@redhat.com> - 3.1.1-1
- Update to upstream 3.1.1 bug fix release
- Drop BR: on deprecated infinipath-psm
* Thu May 31 2018 Jarod Wilson <jarod@redhat.com> - 3.1.0-1
- Update to upstream 3.1.0 release
- Use external pmix and libevent
* Thu May 17 2018 Charalampos Stratakis <cstratak@redhat.com> - 2.1.1-11
- Do not build the python2 subpackage on EL > 7
* Wed May 09 2018 Troy Dawson <tdawson@redhat.com> - 2.1.1-10
- Build with rdma-core-devel instead of libibcm-devel
* Fri Feb 09 2018 Igor Gnatenko <ignatenkobrain@fedoraproject.org> - 2.1.1-9
- Escape macros in %%changelog
* Mon Feb 05 2018 Orion Poplawski <orion@cora.nwra.com> - 2.1.1-8
- Rebuild for rdma-core 16.2
* Wed Jan 31 2018 Christoph Junghans <junghans@votca.org> - 2.1.1-7
- Rebuild for gfortran-8
* Fri Jan 12 2018 Iryna Shcherbina <ishcherb@redhat.com> - 2.1.1-6
- Update Python 2 dependency declarations to new packaging standards
(See https://fedoraproject.org/wiki/FinalizingFedoraSwitchtoPython3)
* Wed Aug 23 2017 Adam Williamson <awilliam@redhat.com> - 2.1.1-5
- Disable RDMA support on 32-bit ARM (#1484155)
- Disable hanging opal_fifo test on ppc64le (gh #2526 / #2966)
* Thu Aug 03 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.1.1-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
* Thu Jul 27 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.1.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
* Wed Jul 19 2017 Orion Poplawski <orion@cora.nwra.com> - 2.1.1-2
- Provide pkgconfig files in the main namespace as well (1471512)
* Fri May 12 2017 Orion Poplawski <orion@cora.nwra.com> - 2.1.1-1
- Update to 2.1.1
* Thu May 4 2017 Orion Poplawski <orion@cora.nwra.com> - 2.1.0-1
- Update to 2.1.0