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import openmpi-4.1.1-1.el8

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CentOS Sources 2021-06-11 04:21:21 +00:00 committed by Andrew Lukoshko
parent 92a6d6a619
commit 87d1202f09
6 changed files with 190 additions and 115 deletions
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2
.gitignore vendored
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@ -1 +1 @@
SOURCES/openmpi-4.0.5.tar.bz2
SOURCES/openmpi-4.1.1.tar.bz2

2
.openmpi.metadata
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@ -1 +1 @@
01fba71461dd0c89e191e3bf1eb70e832d1aa5db SOURCES/openmpi-4.0.5.tar.bz2
fa4dc97da18c8c26d5aadb85262a0f2d52b1aa90 SOURCES/openmpi-4.1.1.tar.bz2

3
SOURCES/macros.openmpi
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@ -1,6 +1,7 @@
%_openmpi_load \
. /etc/profile.d/modules.sh; \
module load mpi/openmpi-%{_arch};
module load mpi/openmpi-%{_arch}; \
export OMPI_MCA_rmaps_base_oversubscribe=1
%_openmpi_unload \
. /etc/profile.d/modules.sh; \
module unload mpi/openmpi-%{_arch};

6
SOURCES/openmpi.module.in
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@ -13,9 +13,9 @@ setenv MPI_FORTRAN_MOD_DIR @FMODDIR@
setenv MPI_INCLUDE @INCDIR@
setenv MPI_LIB @LIBDIR@/lib
setenv MPI_MAN @MANDIR@
setenv MPI_PYTHON_SITEARCH @PYSITEARCH@
setenv MPI_PYTHON2_SITEARCH @PYSITEARCH@
setenv MPI_PYTHON3_SITEARCH @PYSITEARCH@
setenv MPI_PYTHON_SITEARCH @PY2SITEARCH@
setenv MPI_PYTHON2_SITEARCH @PY2SITEARCH@
setenv MPI_PYTHON3_SITEARCH @PY3SITEARCH@
setenv MPI_COMPILER @COMPILER@
setenv MPI_SUFFIX @SUFFIX@
setenv MPI_HOME @LIBDIR@

1
SOURCES/openmpi.pth.py2 Normal file
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@ -0,0 +1 @@
import sys, os; s = os.getenv('MPI_PYTHON2_SITEARCH'); s and (s in sys.path or sys.path.append(s))

291
SPECS/openmpi.spec
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@ -1,18 +1,3 @@
%global _hardened_build 1
# We only compile with gcc, but other people may want other compilers.
# Set the compiler here.
%global opt_cc gcc
# Optional CFLAGS to use with the specific compiler...gcc doesn't need any,
# so uncomment and define to use
#global opt_cflags
%global opt_cxx g++
#global opt_cxxflags
%global opt_f77 gfortran
#global opt_fflags
%global opt_fc gfortran
#global opt_fcflags
# Optional name suffix to use...we leave it off when compiling with gcc, but
# for other compiled versions to install side by side, it will need a
# suffix in order to keep the names from conflicting.
@ -20,60 +5,97 @@
%global macrosdir %(d=%{_rpmconfigdir}/macros.d; [ -d $d ] || d=%{_sysconfdir}/rpm; echo $d)
Name: openmpi%{?_cc_name_suffix}
Version: 4.0.5
Release: 3%{?dist}
Summary: Open Message Passing Interface
Group: Development/Libraries
License: BSD and MIT and Romio
URL: http://www.open-mpi.org/
%if 0%{?fedora} >= 32 || 0%{?rhel} >= 8
%bcond_with python2
%else
%bcond_without python2
%endif
%ifarch aarch64 ppc64le x86_64
%bcond_without ucx
%else
%bcond_with ucx
%endif
# ARM 32-bit is not supported by rdma
# https://bugzilla.redhat.com/show_bug.cgi?id=1780584
%ifarch %{arm}
%bcond_with rdma
%else
%bcond_without rdma
%endif
# Run autogen - needed for some patches
%bcond_with autogen
Name: openmpi%{?_cc_name_suffix}
Version: 4.1.1
Release: 1%{?dist}
Summary: Open Message Passing Interface
License: BSD and MIT and Romio
URL: http://www.open-mpi.org/
# We can't use %%{name} here because of _cc_name_suffix
Source0: https://www.open-mpi.org/software/ompi/v4.0/downloads/openmpi-%{version}.tar.bz2
Source1: openmpi.module.in
Source2: openmpi.pth.py3
Source3: macros.openmpi
Source0: https://www.open-mpi.org/software/ompi/v4.1/downloads/openmpi-%{version}.tar.bz2
Source1: openmpi.module.in
Source2: openmpi.pth.py2
Source3: openmpi.pth.py3
Source4: macros.openmpi
BuildRequires: gcc-gfortran, gcc-c++
%ifnarch s390 s390x
BuildRequires: valgrind-devel
BuildRequires: gcc-c++
BuildRequires: gcc-gfortran
BuildRequires: make
%if %{with autogen}
BuildRequires: libtool
BuildRequires: perl(Data::Dumper)
BuildRequires: perl(File::Find)
%endif
%ifnarch s390 s390x i686
BuildRequires: ucx-devel
%endif
%ifnarch s390 s390x %{arm}
BuildRequires: libibverbs-devel >= 1.1.3, opensm-devel >= 3.3.22
BuildRequires: librdmacm-devel rdma-core-devel
BuildRequires: valgrind-devel
%if %{with rdma}
BuildRequires: opensm-devel > 3.3.0
BuildRequires: rdma-core-devel
%endif
# Doesn't compile:
# vt_dyn.cc:958:28: error: 'class BPatch_basicBlockLoop' has no member named 'getLoopHead'
# loop->getLoopHead()->getStartAddress(), loop_stmts );
#BuildRequires: dyninst-devel
BuildRequires: hwloc-devel >= 2.2.0
#BuildRequires: dyninst-devel
BuildRequires: hwloc-devel >= 2.2.0
# So configure can find lstopo
BuildRequires: hwloc-gui
BuildRequires: java-devel
BuildRequires: hwloc-gui
BuildRequires: java-devel
# Old libevent causes issues
%if !0%{?el7}
BuildRequires: libevent-devel
%endif
BuildRequires: libfabric-devel
%ifnarch s390 s390x
BuildRequires: libfabric-devel
BuildRequires: papi-devel
BuildRequires: papi-devel
%endif
BuildRequires: perl-generators
BuildRequires: perl(Getopt::Long)
BuildRequires: pmix-devel
BuildRequires: perl-generators
BuildRequires: perl-interpreter
BuildRequires: perl(Getopt::Long)
BuildRequires: pmix-devel
BuildRequires: python%{python3_pkgversion}-devel
%ifarch x86_64
BuildRequires: libpsm2-devel
BuildRequires: libpsm2-devel
%endif
%if %{with ucx}
BuildRequires: ucx-devel
%endif
BuildRequires: zlib-devel
%if !0%{?el7}
BuildRequires: rpm-mpi-hooks
%endif
BuildRequires: torque-devel
BuildRequires: zlib-devel
BuildRequires: rpm-mpi-hooks
BuildRequires: libevent-devel >= 2.0.22
Provides: mpi
Requires: environment(modules)
Provides: mpi
%if 0%{?rhel}
# Need this for /etc/profile.d/modules.sh
Requires: environment-modules
%endif
Requires: environment(modules)
# openmpi currently requires ssh to run
# https://svn.open-mpi.org/trac/ompi/ticket/4228
Requires: openssh-clients
Requires: libevent >= 2.0.22
Requires: openssh-clients
# Private openmpi libraries
%global __provides_exclude_from %{_libdir}/openmpi/lib/(lib(mca|ompi|open-(pal|rte|trace))|openmpi/).*.so
@ -90,28 +112,31 @@ researchers. For more information, see http://www.open-mpi.org/ .
%package devel
Summary: Development files for openmpi
Group: Development/Libraries
Requires: %{name} = %{version}-%{release}, gcc-gfortran
Provides: mpi-devel
%if !0%{?el7}
Requires: rpm-mpi-hooks
# Make sure this package is rebuilt with correct Python version when updating
# Otherwise mpi.req from rpm-mpi-hooks doesn't work
# https://bugzilla.redhat.com/show_bug.cgi?id=1705296
Requires: (python(abi) = %{python3_version} if python3)
%endif
%description devel
Contains development headers and libraries for openmpi.
%package java
Summary: Java library
Group: Development/Libraries
Requires: %{name} = %{version}-%{release}
Requires: java-headless
Summary: Java library
Requires: %{name} = %{version}-%{release}
Requires: java-headless
%description java
OpenMPI Java library.
Java library.
%package java-devel
Summary: Java development files for openmpi
Group: Development/Libraries
Requires: %{name}-java = %{version}-%{release}
Requires: java-devel
Summary: Java development files for openmpi
Requires: %{name}-java = %{version}-%{release}
Requires: java-devel
%description java-devel
Contains development wrapper for compiling Java with openmpi.
@ -120,19 +145,32 @@ Contains development wrapper for compiling Java with openmpi.
# particular package, version, compiler
%global namearch openmpi-%{_arch}%{?_cc_name_suffix}
%package -n python3-openmpi
Summary: OpenMPI support for Python 3
Group: Development/Libraries
BuildRequires: python3-devel
Requires: %{name} = %{version}-%{release}
Provides: python-openmpi
%if %{with python2}
%package -n python2-openmpi
Summary: OpenMPI support for Python 2
BuildRequires: python2-devel
Requires: %{name} = %{version}-%{release}
Requires: python(abi) = %{python2_version}
%description -n python3-openmpi
%description -n python2-openmpi
OpenMPI support for Python 2.
%endif
%package -n python%{python3_pkgversion}-openmpi
Summary: OpenMPI support for Python 3
Requires: %{name} = %{version}-%{release}
Requires: python(abi) = %{python3_version}
%description -n python%{python3_pkgversion}-openmpi
OpenMPI support for Python 3.
%prep
%setup -q -n openmpi-%{version}
%autosetup -p1 -n %{name}-%{version}
%if %{with autogen}
./autogen.pl --force
%endif
%build
%set_build_flags
@ -141,37 +179,23 @@ OpenMPI support for Python 3.
--includedir=%{_includedir}/%{namearch} \
--sysconfdir=%{_sysconfdir}/%{namearch} \
--disable-silent-rules \
--disable-builtin-atomics \
--enable-mpi-thread-multiple \
%ifnarch %{power64}
--enable-builtin-atomics \
--enable-mpi-cxx \
%endif
--enable-mpi-java \
--enable-mpi-fortran=all \
--enable-cxx-exceptions \
--enable-mpi1-compatibility \
--with-sge \
%ifnarch s390 s390x
--with-valgrind \
--enable-memchecker \
%endif
%ifnarch s390 s390x i686
--with-ucx \
--with-ucx-libdir=%{_libdir} \
%endif
--with-hwloc=external \
--with-pmix=external \
--with-hwloc=/usr \
%if !0%{?el7}
--with-libevent=external \
CC=%{opt_cc} CXX=%{opt_cxx} FC=%{opt_fc} \
LDFLAGS="%{build_ldflags}" \
CFLAGS="%{?opt_cflags}%{!?opt_cflags:$RPM_OPT_FLAGS}" \
CXXFLAGS="%{?opt_cxxflags}%{!?opt_cxxflags:$RPM_OPT_FLAGS}" \
FCFLAGS="%{?opt_fcflags}%{!?opt_fcflags:$RPM_OPT_FLAGS}" \
--with-contrib-vt-flags='CXXFLAGS="-I%{_includedir}/dyninst -L%{_libdir}/dyninst"'
--with-pmix=external \
%endif
make %{?_smp_mflags} V=1
%make_build V=1
%install
make install DESTDIR=%{buildroot}
%make_install
find %{buildroot}%{_libdir}/%{name}/lib -name \*.la | xargs rm
find %{buildroot}%{_mandir}/%{namearch} -type f | xargs gzip -9
ln -s mpicc.1.gz %{buildroot}%{_mandir}/%{namearch}/man1/mpiCC.1.gz
@ -180,21 +204,26 @@ rm %{buildroot}%{_mandir}/%{namearch}/man1/mpiCC.1
mkdir %{buildroot}%{_mandir}/%{namearch}/man{2,4,5,6,8,9,n}
# Make the environment-modules file
mkdir -p %{buildroot}%{_sysconfdir}/modulefiles/mpi
mkdir -p %{buildroot}%{_datadir}/modulefiles/mpi
# Since we're doing our own substitution here, use our own definitions.
sed 's#@LIBDIR@#%{_libdir}/%{name}#;
s#@ETCDIR@#%{_sysconfdir}/%{namearch}#;
s#@FMODDIR@#%{_fmoddir}/%{name}#;
s#@INCDIR@#%{_includedir}/%{namearch}#;
s#@MANDIR@#%{_mandir}/%{namearch}#;
s#@PYSITEARCH@#%{python3_sitearch}/%{name}#;
%if %{with python2}
s#@PY2SITEARCH@#%{python2_sitearch}/%{name}#;
%else
/@PY2SITEARCH@/d;
%endif
s#@PY3SITEARCH@#%{python3_sitearch}/%{name}#;
s#@COMPILER@#openmpi-%{_arch}%{?_cc_name_suffix}#;
s#@SUFFIX@#%{?_cc_name_suffix}_openmpi#' \
<%{SOURCE1} \
>%{buildroot}%{_sysconfdir}/modulefiles/mpi/%{namearch}
>%{buildroot}%{_datadir}/modulefiles/mpi/%{namearch}
# make the rpm config file
install -Dpm 644 %{SOURCE3} %{buildroot}/%{macrosdir}/macros.%{namearch}
install -Dpm 644 %{SOURCE4} %{buildroot}/%{macrosdir}/macros.%{namearch}
# Link the fortran module to proper location
mkdir -p %{buildroot}%{_fmoddir}/%{name}
@ -215,8 +244,12 @@ sed -i -e s/-ldl// -e s/-lhwloc// \
%{buildroot}%{_libdir}/%{name}/share/openmpi/*-wrapper-data.txt
# install .pth files
%if %{with python2}
mkdir -p %{buildroot}/%{python2_sitearch}/%{name}
install -pDm0644 %{SOURCE2} %{buildroot}/%{python2_sitearch}/openmpi.pth
%endif
mkdir -p %{buildroot}/%{python3_sitearch}/%{name}
install -pDm0644 %{SOURCE2} %{buildroot}/%{python3_sitearch}/openmpi.pth
install -pDm0644 %{SOURCE3} %{buildroot}/%{python3_sitearch}/openmpi.pth
%check
make check
@ -231,33 +264,58 @@ make check
%dir %{_mandir}/%{namearch}
%dir %{_mandir}/%{namearch}/man*
%config(noreplace) %{_sysconfdir}/%{namearch}/*
%{_libdir}/%{name}/bin/*.pl
%{_libdir}/%{name}/bin/mpi[er]*
%{_libdir}/%{name}/bin/ompi*
%{_libdir}/%{name}/bin/orte[-dr_]*
%ifnarch s390 s390x i686
%{_libdir}/%{name}/bin/osh*
%{_libdir}/%{name}/bin/shmem*
%if %{with ucx}
%{_libdir}/%{name}/bin/oshmem_info
%{_libdir}/%{name}/bin/oshrun
%{_libdir}/%{name}/bin/shmemrun
%endif
%{_libdir}/%{name}/lib/*.so.*
%{_mandir}/%{namearch}/man1/*
%{_mandir}/%{namearch}/man7/*
%{_libdir}/%{name}/lib/*.so.40*
%{_libdir}/%{name}/lib/libmca_common_ofi.so.10*
%{_libdir}/%{name}/lib/libmca*.so.41*
%{_libdir}/%{name}/lib/libmca*.so.50*
%if 0%{?el7}
%{_libdir}/%{name}/lib/pmix/
%endif
%{_mandir}/%{namearch}/man1/mpi[er]*
%{_mandir}/%{namearch}/man1/ompi*
%{_mandir}/%{namearch}/man1/orte[-dr_]*
%if %{with ucx}
%{_mandir}/%{namearch}/man1/oshmem_info*
%{_mandir}/%{namearch}/man1/oshrun*
%{_mandir}/%{namearch}/man1/shmemrun*
%endif
%{_mandir}/%{namearch}/man7/ompi_*
%{_mandir}/%{namearch}/man7/opal_*
%{_mandir}/%{namearch}/man7/orte*
%{_libdir}/%{name}/lib/openmpi/*
%{_sysconfdir}/modulefiles/mpi/
%{_datadir}/modulefiles/mpi/
%dir %{_libdir}/%{name}/share
%dir %{_libdir}/%{name}/share/openmpi
%{_libdir}/%{name}/share/openmpi/amca-param-sets
%{_libdir}/%{name}/share/openmpi/help*.txt
%ifnarch s390 %{arm}
%if %{with rdma}
%{_libdir}/%{name}/share/openmpi/mca-btl-openib-device-params.ini
%endif
%if 0%{?el7}
%{_libdir}/%{name}/share/pmix/
%endif
%files devel
%dir %{_includedir}/%{namearch}
%{_libdir}/%{name}/bin/aggregate_profile.pl
%{_libdir}/%{name}/bin/mpi[cCf]*
%{_libdir}/%{name}/bin/opal_*
%{_libdir}/%{name}/bin/orte[cCf]*
%if %{with ucx}
%{_libdir}/%{name}/bin/osh[cCf]*
%endif
%{_libdir}/%{name}/bin/profile2mat.pl
%if %{with ucx}
%{_libdir}/%{name}/bin/shmem[cCf]*
%endif
%{_includedir}/%{namearch}/*
%{_fmoddir}/%{name}/
%{_libdir}/%{name}/lib/*.so
@ -265,6 +323,10 @@ make check
%{_libdir}/%{name}/lib/pkgconfig/
%{_libdir}/pkgconfig/*.pc
%{_mandir}/%{namearch}/man1/mpi[cCf]*
%if %{with ucx}
%{_mandir}/%{namearch}/man1/osh[cCf]*
%{_mandir}/%{namearch}/man1/shmem[cCf]*
%endif
%{_mandir}/%{namearch}/man1/opal_*
%{_mandir}/%{namearch}/man3/*
%{_libdir}/%{name}/share/openmpi/openmpi-valgrind.supp
@ -281,12 +343,23 @@ make check
%{_libdir}/%{name}/share/doc/
%{_mandir}/%{namearch}/man1/mpijavac.1.gz
%files -n python3-openmpi
%if %{with python2}
%files -n python2-openmpi
%dir %{python2_sitearch}/%{name}
%{python2_sitearch}/openmpi.pth
%endif
%files -n python%{python3_pkgversion}-openmpi
%dir %{python3_sitearch}/%{name}
%{python3_sitearch}/openmpi.pth
%changelog
* Wed Jun 09 2021 Honggang Li <honli@redhat.com> - 4.1.1-1
- Update to upstream v4.1.1 release
- Sync with Fedora build
- Resolves: rhbz#1928631, rhbz#1920801
* Wed Jan 27 2021 Honggang Li <honli@redhat.com> - 4.0.5-3
- disable gcc built-in atomics
- Resolves: rhbz#1921262