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Merged update from upstream sources

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This is an automated DistroBaker update from upstream sources.
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contact the OSCI team.

Source: https://src.fedoraproject.org/rpms/openmpi.git#8fc779b59b264ddd141f811bbb22d2e83ee3e517
This commit is contained in:
DistroBaker 2021-01-29 07:39:46 +00:00
parent a954425021
commit 51ea11f059
5 changed files with 1797 additions and 72 deletions
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1
.gitignore vendored
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@ -53,3 +53,4 @@ openmpi-1.4.1-RH.tar.bz2
/openmpi-4.0.4rc1.tar.bz2
/openmpi-4.0.4.tar.bz2
/openmpi-4.0.5.tar.bz2
/openmpi-4.1.0.tar.bz2

1682
8322.patch Normal file
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File diff suppressed because it is too large Load Diff

25
8348.patch Normal file
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@ -0,0 +1,25 @@
From 838568da9fce85b4555b0e0cbd899c8e8ef75696 Mon Sep 17 00:00:00 2001
From: George Bosilca <bosilca@icl.utk.edu>
Date: Wed, 6 Jan 2021 13:30:40 -0500
Subject: [PATCH] A started generalized request should be marked as pending.
Fixes #8340
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
(cherry picked from commit 434a2515f8aab11f505b2fca0b3d8cc41e24cef2)
---
ompi/request/grequest.c | 1 +
1 file changed, 1 insertion(+)
diff --git a/ompi/request/grequest.c b/ompi/request/grequest.c
index c895b4232b6..02affd642aa 100644
--- a/ompi/request/grequest.c
+++ b/ompi/request/grequest.c
@@ -163,6 +163,7 @@ int ompi_grequest_start(
greq->greq_free.c_free = gfree_fn;
greq->greq_cancel.c_cancel = gcancel_fn;
greq->greq_base.req_status = ompi_status_empty;
+ greq->greq_base.req_complete = REQUEST_PENDING;
*request = &greq->greq_base;
return OMPI_SUCCESS;

159
openmpi.spec
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@ -1,17 +1,3 @@
%global _hardened_build 1
# We only compile with gcc, but other people may want other compilers.
# Set the compiler here.
%global opt_cc gcc
# Optional CFLAGS to use with the specific compiler...gcc doesn't need any,
# so uncomment and define to use
#global opt_cflags
%global opt_cxx g++
#global opt_cxxflags
%global opt_f77 gfortran
#global opt_fflags
%global opt_fc gfortran
#global opt_fcflags
# Optional name suffix to use...we leave it off when compiling with gcc, but
# for other compiled versions to install side by side, it will need a
# suffix in order to keep the names from conflicting.
@ -39,70 +25,85 @@
%bcond_without rdma
%endif
Name: openmpi%{?_cc_name_suffix}
Version: 4.0.5
Release: 2%{?dist}
Summary: Open Message Passing Interface
License: BSD and MIT and Romio
URL: http://www.open-mpi.org/
# Run autogen - needed for some patches
# For Patch0
%bcond_without autogen
Name: openmpi%{?_cc_name_suffix}
Version: 4.1.0
Release: 5%{?dist}
Summary: Open Message Passing Interface
License: BSD and MIT and Romio
URL: http://www.open-mpi.org/
# We can't use %%{name} here because of _cc_name_suffix
Source0: https://www.open-mpi.org/software/ompi/v4.0/downloads/openmpi-%{version}.tar.bz2
Source1: openmpi.module.in
Source2: openmpi.pth.py2
Source3: openmpi.pth.py3
Source4: macros.openmpi
Source0: https://www.open-mpi.org/software/ompi/v4.1/downloads/openmpi-%{version}.tar.bz2
Source1: openmpi.module.in
Source2: openmpi.pth.py2
Source3: openmpi.pth.py3
Source4: macros.openmpi
BuildRequires: gcc-c++
BuildRequires: gcc-gfortran
BuildRequires: valgrind-devel
# Fix AVX library linkage
Patch0: https://patch-diff.githubusercontent.com/raw/open-mpi/ompi/pull/8322.patch
# Fix generalized requests (mpi4py test failure)
Patch1: https://patch-diff.githubusercontent.com/raw/open-mpi/ompi/pull/8348.patch
BuildRequires: gcc-c++
BuildRequires: gcc-gfortran
BuildRequires: make
%if %{with autogen}
BuildRequires: libtool
BuildRequires: perl(Data::Dumper)
BuildRequires: perl(File::Find)
%endif
BuildRequires: valgrind-devel
%if %{with rdma}
BuildRequires: opensm-devel > 3.3.0
BuildRequires: rdma-core-devel
BuildRequires: opensm-devel > 3.3.0
BuildRequires: rdma-core-devel
%endif
# Doesn't compile:
# vt_dyn.cc:958:28: error: 'class BPatch_basicBlockLoop' has no member named 'getLoopHead'
# loop->getLoopHead()->getStartAddress(), loop_stmts );
#BuildRequires: dyninst-devel
BuildRequires: hwloc-devel
#BuildRequires: dyninst-devel
BuildRequires: hwloc-devel
# So configure can find lstopo
BuildRequires: hwloc-gui
BuildRequires: java-devel
BuildRequires: hwloc-gui
BuildRequires: java-devel
# Old libevent causes issues
%if !0%{?el7}
BuildRequires: libevent-devel
BuildRequires: libevent-devel
%endif
BuildRequires: libfabric-devel
BuildRequires: libfabric-devel
%ifnarch s390 s390x
BuildRequires: papi-devel
BuildRequires: papi-devel
%endif
BuildRequires: orangefs-devel
BuildRequires: perl-generators
BuildRequires: perl-interpreter
BuildRequires: perl(Getopt::Long)
BuildRequires: pmix-devel
BuildRequires: python%{python3_pkgversion}-devel
BuildRequires: orangefs-devel
BuildRequires: perl-generators
BuildRequires: perl-interpreter
BuildRequires: perl(Getopt::Long)
BuildRequires: pmix-devel
BuildRequires: python%{python3_pkgversion}-devel
%ifarch x86_64
BuildRequires: infinipath-psm-devel
BuildRequires: libpsm2-devel
BuildRequires: infinipath-psm-devel
BuildRequires: libpsm2-devel
%endif
%if %{with ucx}
BuildRequires: ucx-devel
BuildRequires: ucx-devel
%endif
BuildRequires: zlib-devel
BuildRequires: zlib-devel
%if !0%{?el7}
BuildRequires: rpm-mpi-hooks
BuildRequires: rpm-mpi-hooks
%endif
Provides: mpi
Provides: mpi
%if 0%{?rhel}
# Need this for /etc/profile.d/modules.sh
Requires: environment-modules
Requires: environment-modules
%endif
Requires: environment(modules)
Requires: environment(modules)
# openmpi currently requires ssh to run
# https://svn.open-mpi.org/trac/ompi/ticket/4228
Requires: openssh-clients
Requires: openssh-clients
# Private openmpi libraries
%global __provides_exclude_from %{_libdir}/openmpi/lib/(lib(mca|ompi|open-(pal|rte|trace))|openmpi/).*.so
@ -133,17 +134,17 @@ Requires: (python(abi) = %{python3_version} if python3)
Contains development headers and libraries for openmpi.
%package java
Summary: Java library
Requires: %{name} = %{version}-%{release}
Requires: java-headless
Summary: Java library
Requires: %{name} = %{version}-%{release}
Requires: java-headless
%description java
Java library.
%package java-devel
Summary: Java development files for openmpi
Requires: %{name}-java = %{version}-%{release}
Requires: java-devel
Summary: Java development files for openmpi
Requires: %{name}-java = %{version}-%{release}
Requires: java-devel
%description java-devel
Contains development wrapper for compiling Java with openmpi.
@ -154,19 +155,19 @@ Contains development wrapper for compiling Java with openmpi.
%if %{with python2}
%package -n python2-openmpi
Summary: OpenMPI support for Python 2
BuildRequires: python2-devel
Requires: %{name} = %{version}-%{release}
Requires: python(abi) = %{python2_version}
Summary: OpenMPI support for Python 2
BuildRequires: python2-devel
Requires: %{name} = %{version}-%{release}
Requires: python(abi) = %{python2_version}
%description -n python2-openmpi
OpenMPI support for Python 2.
%endif
%package -n python%{python3_pkgversion}-openmpi
Summary: OpenMPI support for Python 3
Requires: %{name} = %{version}-%{release}
Requires: python(abi) = %{python3_version}
Summary: OpenMPI support for Python 3
Requires: %{name} = %{version}-%{release}
Requires: python(abi) = %{python3_version}
%description -n python%{python3_pkgversion}-openmpi
OpenMPI support for Python 3.
@ -174,8 +175,13 @@ OpenMPI support for Python 3.
%prep
%autosetup -p1
%if %{with autogen}
./autogen.pl --force
%endif
%build
%set_build_flags
./configure --prefix=%{_libdir}/%{name} \
--mandir=%{_mandir}/%{namearch} \
--includedir=%{_includedir}/%{namearch} \
@ -193,12 +199,6 @@ OpenMPI support for Python 3.
--with-libevent=external \
--with-pmix=external \
%endif
CC=%{opt_cc} CXX=%{opt_cxx} \
LDFLAGS='%{__global_ldflags}' \
CFLAGS="%{?opt_cflags} %{!?opt_cflags:$RPM_OPT_FLAGS}" \
CXXFLAGS="%{?opt_cxxflags} %{!?opt_cxxflags:$RPM_OPT_FLAGS}" \
FC=%{opt_fc} FCFLAGS="%{?opt_fcflags} %{!?opt_fcflags:$RPM_OPT_FLAGS}"
# --with-contrib-vt-flags='CXXFLAGS="-I%{_includedir}/dyninst -L%{_libdir}/dyninst"' \
%make_build V=1
@ -281,6 +281,7 @@ make check
%{_libdir}/%{name}/bin/shmemrun
%endif
%{_libdir}/%{name}/lib/*.so.40*
%{_libdir}/%{name}/lib/libmca_common_ofi.so.10*
%{_libdir}/%{name}/lib/libmca*.so.41*
%{_libdir}/%{name}/lib/libmca*.so.50*
%if 0%{?el7}
@ -362,6 +363,22 @@ make check
%changelog
* Thu Jan 28 2021 Orion Poplawski <orion@nwra.com> - 4.1.0-5
- Add upstream patch for generalized requests
* Thu Jan 28 2021 Orion Poplawski <orion@nwra.com> - 4.1.0-4
- Add upstream patch to fix AVX library linkage
* Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 4.1.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
* Sun Jan 24 2021 Orion Poplawski <orion@nwra.com> - 4.1.0-2
- Use set_build_flags macro
- Drop old opt_ macros
* Sun Jan 24 2021 Orion Poplawski <orion@nwra.com> - 4.1.0-1
- Update to 4.1.0
* Wed Sep 23 2020 Orion Poplawski <orion@nwra.com> - 4.0.5-2
- Rebuild for libevent 2.1.12

2
sources
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@ -1 +1 @@
SHA512 (openmpi-4.0.5.tar.bz2) = b7a1a5ccfc0eaa0f0504ff770b550480f7ae6727fa891e3310d9340a0d844a2ceddf62c2e59efd047ab9416b24c829919bbccd29606ca0e0d7a0569dad800011
SHA512 (openmpi-4.1.0.tar.bz2) = eaf086ab4929ce5a9a3e867c8315bf802ff4dc75d3f05d740e22dfd97803a4559212dacbe06920d42ac6644f46057eb6980cccf5a8b0a7df9c5bdf5bffc0b3a6