From 1024cc44fdefa04960346697988560f7eacc9f2d Mon Sep 17 00:00:00 2001 From: CentOS Sources Date: Tue, 1 Mar 2022 07:19:29 -0500 Subject: [PATCH] import openmpi-4.1.1-5.el9 --- .gitignore | 2 +- .openmpi.metadata | 2 +- ...-supported-transports-and-devices-fo.patch | 367 ++++++++++++++++++ ...89935aef4fce825d0db831b4b53accc62c32.patch | 33 ++ SPECS/openmpi.spec | 26 +- 5 files changed, 417 insertions(+), 13 deletions(-) create mode 100644 SOURCES/0001-Revert-ucx-check-supported-transports-and-devices-fo.patch create mode 100644 SOURCES/266189935aef4fce825d0db831b4b53accc62c32.patch diff --git a/.gitignore b/.gitignore index b6e10a1..7163ca1 100644 --- a/.gitignore +++ b/.gitignore @@ -1 +1 @@ -SOURCES/openmpi-4.1.2.tar.bz2 +SOURCES/openmpi-4.1.1.tar.bz2 diff --git a/.openmpi.metadata b/.openmpi.metadata index 15bcc32..2f44671 100644 --- a/.openmpi.metadata +++ b/.openmpi.metadata @@ -1 +1 @@ -a8da271d00d808359dda41628e5cb241fa6f6df5 SOURCES/openmpi-4.1.2.tar.bz2 +fa4dc97da18c8c26d5aadb85262a0f2d52b1aa90 SOURCES/openmpi-4.1.1.tar.bz2 diff --git a/SOURCES/0001-Revert-ucx-check-supported-transports-and-devices-fo.patch b/SOURCES/0001-Revert-ucx-check-supported-transports-and-devices-fo.patch new file mode 100644 index 0000000..2871232 --- /dev/null +++ b/SOURCES/0001-Revert-ucx-check-supported-transports-and-devices-fo.patch @@ -0,0 +1,367 @@ +From 63c80c7692e55f634cbca6f67cc5c9cdef3a04d2 Mon Sep 17 00:00:00 2001 +From: Honggang Li +Date: Mon, 28 Jun 2021 21:38:13 +0800 +Subject: [PATCH] Revert "ucx: check supported transports and devices for + setting priority" + +This reverts commit c36d7459b6331c4da825cad5a64326e7c1a272aa. +--- + contrib/platform/mellanox/optimized.conf | 2 - + ompi/mca/pml/ucx/pml_ucx_component.c | 15 +- + opal/mca/common/ucx/common_ucx.c | 202 +---------------------- + opal/mca/common/ucx/common_ucx.h | 15 -- + opal/mca/common/ucx/configure.m4 | 2 - + 5 files changed, 2 insertions(+), 234 deletions(-) + +diff --git a/contrib/platform/mellanox/optimized.conf b/contrib/platform/mellanox/optimized.conf +index 543fd8d1e224..b86b37c9e2fa 100644 +--- a/contrib/platform/mellanox/optimized.conf ++++ b/contrib/platform/mellanox/optimized.conf +@@ -61,8 +61,6 @@ + coll = ^ml + hwloc_base_binding_policy = core + btl = self +-pml_ucx_tls = any +-pml_ucx_devices = any + # Basic behavior to smooth startup + mca_base_component_show_load_errors = 0 + orte_abort_timeout = 10 +diff --git a/ompi/mca/pml/ucx/pml_ucx_component.c b/ompi/mca/pml/ucx/pml_ucx_component.c +index 6aed6c41d11d..ed9cc6573e8e 100644 +--- a/ompi/mca/pml/ucx/pml_ucx_component.c ++++ b/ompi/mca/pml/ucx/pml_ucx_component.c +@@ -107,26 +107,13 @@ static mca_pml_base_module_t* + mca_pml_ucx_component_init(int* priority, bool enable_progress_threads, + bool enable_mpi_threads) + { +- opal_common_ucx_support_level_t support_level; + int ret; + +- support_level = opal_common_ucx_support_level(ompi_pml_ucx.ucp_context); +- if (support_level == OPAL_COMMON_UCX_SUPPORT_NONE) { +- return NULL; +- } +- + if ( (ret = mca_pml_ucx_init(enable_mpi_threads)) != 0) { + return NULL; + } + +- /* +- * If found supported devices - set to the configured (high) priority. +- * Otherwise - Found only supported transports (which could be exposed by +- * unsupported devices), so set a priority lower than ob1. +- */ +- *priority = (support_level == OPAL_COMMON_UCX_SUPPORT_DEVICE) ? +- ompi_pml_ucx.priority : 19; +- PML_UCX_VERBOSE(2, "returning priority %d", *priority); ++ *priority = ompi_pml_ucx.priority; + return &ompi_pml_ucx.super; + } + +diff --git a/opal/mca/common/ucx/common_ucx.c b/opal/mca/common/ucx/common_ucx.c +index ac7a17d799a5..ae8e66877ab6 100644 +--- a/opal/mca/common/ucx/common_ucx.c ++++ b/opal/mca/common/ucx/common_ucx.c +@@ -14,11 +14,8 @@ + #include "opal/mca/base/mca_base_framework.h" + #include "opal/mca/pmix/pmix.h" + #include "opal/memoryhooks/memory.h" +-#include "opal/util/argv.h" + + #include +-#include +-#include + + /***********************************************************************/ + +@@ -28,8 +25,7 @@ opal_common_ucx_module_t opal_common_ucx = { + .verbose = 0, + .progress_iterations = 100, + .registered = 0, +- .opal_mem_hooks = 0, +- .tls = NULL ++ .opal_mem_hooks = 0 + }; + + static void opal_common_ucx_mem_release_cb(void *buf, size_t length, +@@ -40,15 +36,10 @@ static void opal_common_ucx_mem_release_cb(void *buf, size_t length, + + OPAL_DECLSPEC void opal_common_ucx_mca_var_register(const mca_base_component_t *component) + { +- static const char *default_tls = "rc_verbs,ud_verbs,rc_mlx5,dc_mlx5,cuda_ipc,rocm_ipc"; +- static const char *default_devices = "mlx*"; + static int registered = 0; + static int hook_index; + static int verbose_index; + static int progress_index; +- static int tls_index; +- static int devices_index; +- + if (!registered) { + verbose_index = mca_base_var_register("opal", "opal_common", "ucx", "verbose", + "Verbose level of the UCX components", +@@ -69,29 +60,6 @@ OPAL_DECLSPEC void opal_common_ucx_mca_var_register(const mca_base_component_t * + OPAL_INFO_LVL_3, + MCA_BASE_VAR_SCOPE_LOCAL, + &opal_common_ucx.opal_mem_hooks); +- +- opal_common_ucx.tls = malloc(sizeof(*opal_common_ucx.tls)); +- *opal_common_ucx.tls = strdup(default_tls); +- tls_index = mca_base_var_register("opal", "opal_common", "ucx", "tls", +- "List of UCX transports which should be supported on the system, to enable " +- "selecting the UCX component. Special values: any (any available). " +- "A '^' prefix negates the list. " +- "For example, in order to exclude on shared memory and TCP transports, " +- "please set to '^posix,sysv,self,tcp,cma,knem,xpmem'.", +- MCA_BASE_VAR_TYPE_STRING, NULL, 0, 0, +- OPAL_INFO_LVL_3, +- MCA_BASE_VAR_SCOPE_LOCAL, +- opal_common_ucx.tls); +- +- opal_common_ucx.devices = malloc(sizeof(*opal_common_ucx.devices)); +- *opal_common_ucx.devices = strdup(default_devices); +- devices_index = mca_base_var_register("opal", "opal_common", "ucx", "devices", +- "List of device driver pattern names, which, if supported by UCX, will " +- "bump its priority above ob1. Special values: any (any available)", +- MCA_BASE_VAR_TYPE_STRING, NULL, 0, 0, +- OPAL_INFO_LVL_3, +- MCA_BASE_VAR_SCOPE_LOCAL, +- opal_common_ucx.devices); + registered = 1; + } + if (component) { +@@ -107,14 +75,6 @@ OPAL_DECLSPEC void opal_common_ucx_mca_var_register(const mca_base_component_t * + component->mca_type_name, + component->mca_component_name, + "opal_mem_hooks", 0); +- mca_base_var_register_synonym(tls_index, component->mca_project_name, +- component->mca_type_name, +- component->mca_component_name, +- "tls", 0); +- mca_base_var_register_synonym(devices_index, component->mca_project_name, +- component->mca_type_name, +- component->mca_component_name, +- "devices", 0); + } + } + +@@ -163,166 +123,6 @@ OPAL_DECLSPEC void opal_common_ucx_mca_deregister(void) + opal_output_close(opal_common_ucx.output); + } + +-#if HAVE_DECL_OPEN_MEMSTREAM +-static bool opal_common_ucx_check_device(const char *device_name, char **device_list) +-{ +- char sysfs_driver_link[PATH_MAX]; +- char driver_path[PATH_MAX]; +- char *ib_device_name; +- char *driver_name; +- char **list_item; +- ssize_t ret; +- +- /* mlx5_0:1 */ +- ret = sscanf(device_name, "%m[^:]%*d", &ib_device_name); +- if (ret != 1) { +- return false; +- } +- +- sysfs_driver_link[sizeof(sysfs_driver_link) - 1] = '\0'; +- snprintf(sysfs_driver_link, sizeof(sysfs_driver_link) - 1, +- "/sys/class/infiniband/%s/device/driver", ib_device_name); +- free(ib_device_name); +- +- driver_path[sizeof(driver_path) - 1] = '\0'; +- ret = readlink(sysfs_driver_link, driver_path, sizeof(driver_path) - 1); +- if (ret < 0) { +- MCA_COMMON_UCX_VERBOSE(2, "readlink(%s) failed: %s", sysfs_driver_link, +- strerror(errno)); +- return false; +- } +- +- driver_name = basename(driver_path); +- for (list_item = device_list; *list_item != NULL; ++list_item) { +- if (!fnmatch(*list_item, driver_name, 0)) { +- MCA_COMMON_UCX_VERBOSE(2, "driver '%s' matched by '%s'", +- driver_path, *list_item); +- return true; +- } +- } +- +- return false; +-} +-#endif +- +-OPAL_DECLSPEC opal_common_ucx_support_level_t +-opal_common_ucx_support_level(ucp_context_h context) +-{ +- opal_common_ucx_support_level_t support_level = OPAL_COMMON_UCX_SUPPORT_NONE; +- static const char *support_level_names[] = { +- [OPAL_COMMON_UCX_SUPPORT_NONE] = "none", +- [OPAL_COMMON_UCX_SUPPORT_TRANSPORT] = "transports only", +- [OPAL_COMMON_UCX_SUPPORT_DEVICE] = "transports and devices" +- }; +-#if HAVE_DECL_OPEN_MEMSTREAM +- char *rsc_tl_name, *rsc_device_name; +- char **tl_list, **device_list, **list_item; +- bool is_any_tl, is_any_device; +- bool found_tl, negate; +- char line[128]; +- FILE *stream; +- char *buffer; +- size_t size; +- int ret; +-#endif +- +- is_any_tl = !strcmp(*opal_common_ucx.tls, "any"); +- is_any_device = !strcmp(*opal_common_ucx.devices, "any"); +- +- /* Check for special value "any" */ +- if (is_any_tl && is_any_device) { +- MCA_COMMON_UCX_VERBOSE(1, "ucx is enabled on any transport or device", +- *opal_common_ucx.tls); +- support_level = OPAL_COMMON_UCX_SUPPORT_DEVICE; +- goto out; +- } +- +-#if HAVE_DECL_OPEN_MEMSTREAM +- /* Split transports list */ +- negate = ('^' == (*opal_common_ucx.tls)[0]); +- tl_list = opal_argv_split(*opal_common_ucx.tls + (negate ? 1 : 0), ','); +- if (tl_list == NULL) { +- MCA_COMMON_UCX_VERBOSE(1, "failed to split tl list '%s', ucx is disabled", +- *opal_common_ucx.tls); +- goto out; +- } +- +- /* Split devices list */ +- device_list = opal_argv_split(*opal_common_ucx.devices, ','); +- if (device_list == NULL) { +- MCA_COMMON_UCX_VERBOSE(1, "failed to split devices list '%s', ucx is disabled", +- *opal_common_ucx.devices); +- goto out_free_tl_list; +- } +- +- /* Open memory stream to dump UCX information to */ +- stream = open_memstream(&buffer, &size); +- if (stream == NULL) { +- MCA_COMMON_UCX_VERBOSE(1, "failed to open memory stream for ucx info (%s), " +- "ucx is disabled", strerror(errno)); +- goto out_free_device_list; +- } +- +- /* Print ucx transports information to the memory stream */ +- ucp_context_print_info(context, stream); +- +- /* Rewind and read transports/devices list from the stream */ +- fseek(stream, 0, SEEK_SET); +- while ((support_level != OPAL_COMMON_UCX_SUPPORT_DEVICE) && +- (fgets(line, sizeof(line), stream) != NULL)) { +- rsc_tl_name = NULL; +- ret = sscanf(line, +- /* "# resource 6 : md 5 dev 4 flags -- rc_verbs/mlx5_0:1" */ +- "# resource %*d : md %*d dev %*d flags -- %m[^/ \n\r]/%m[^/ \n\r]", +- &rsc_tl_name, &rsc_device_name); +- if (ret != 2) { +- free(rsc_tl_name); +- continue; +- } +- +- /* Check if 'rsc_tl_name' is found provided list */ +- found_tl = is_any_tl; +- for (list_item = tl_list; !found_tl && (*list_item != NULL); ++list_item) { +- found_tl = !strcmp(*list_item, rsc_tl_name); +- } +- +- /* Check if the transport has a match (either positive or negative) */ +- assert(!(is_any_tl && negate)); +- if (found_tl != negate) { +- if (is_any_device || +- opal_common_ucx_check_device(rsc_device_name, device_list)) { +- MCA_COMMON_UCX_VERBOSE(2, "%s/%s: matched both transport and device list", +- rsc_tl_name, rsc_device_name); +- support_level = OPAL_COMMON_UCX_SUPPORT_DEVICE; +- } else { +- MCA_COMMON_UCX_VERBOSE(2, "%s/%s: matched transport list but not device list", +- rsc_tl_name, rsc_device_name); +- support_level = OPAL_COMMON_UCX_SUPPORT_TRANSPORT; +- } +- } else { +- MCA_COMMON_UCX_VERBOSE(2, "%s/%s: did not match transport list", +- rsc_tl_name, rsc_device_name); +- } +- +- free(rsc_device_name); +- free(rsc_tl_name); +- } +- +- MCA_COMMON_UCX_VERBOSE(2, "support level is %s", support_level_names[support_level]); +- fclose(stream); +- free(buffer); +- +-out_free_device_list: +- opal_argv_free(device_list); +-out_free_tl_list: +- opal_argv_free(tl_list); +-out: +-#else +- MCA_COMMON_UCX_VERBOSE(2, "open_memstream() was not found, ucx is disabled"); +-#endif +- return support_level; +-} +- + void opal_common_ucx_empty_complete_cb(void *request, ucs_status_t status) + { + } +diff --git a/opal/mca/common/ucx/common_ucx.h b/opal/mca/common/ucx/common_ucx.h +index 92cdd738ef98..202131ac8907 100644 +--- a/opal/mca/common/ucx/common_ucx.h ++++ b/opal/mca/common/ucx/common_ucx.h +@@ -88,8 +88,6 @@ typedef struct opal_common_ucx_module { + int progress_iterations; + int registered; + bool opal_mem_hooks; +- char **tls; +- char **devices; + } opal_common_ucx_module_t; + + typedef struct opal_common_ucx_del_proc { +@@ -97,23 +95,10 @@ typedef struct opal_common_ucx_del_proc { + size_t vpid; + } opal_common_ucx_del_proc_t; + +-typedef enum { +- /* No supported transports found (according to configured list of supported +- transports) */ +- OPAL_COMMON_UCX_SUPPORT_NONE, +- +- /* Have supported transports but not supported devices */ +- OPAL_COMMON_UCX_SUPPORT_TRANSPORT, +- +- /* Have both supported transports and supported devices */ +- OPAL_COMMON_UCX_SUPPORT_DEVICE, +-} opal_common_ucx_support_level_t; +- + extern opal_common_ucx_module_t opal_common_ucx; + + OPAL_DECLSPEC void opal_common_ucx_mca_register(void); + OPAL_DECLSPEC void opal_common_ucx_mca_deregister(void); +-OPAL_DECLSPEC opal_common_ucx_support_level_t opal_common_ucx_support_level(ucp_context_h context); + OPAL_DECLSPEC void opal_common_ucx_mca_proc_added(void); + OPAL_DECLSPEC void opal_common_ucx_empty_complete_cb(void *request, ucs_status_t status); + OPAL_DECLSPEC int opal_common_ucx_mca_pmix_fence(ucp_worker_h worker); +diff --git a/opal/mca/common/ucx/configure.m4 b/opal/mca/common/ucx/configure.m4 +index af8628a889c6..27e07c2005b2 100644 +--- a/opal/mca/common/ucx/configure.m4 ++++ b/opal/mca/common/ucx/configure.m4 +@@ -18,8 +18,6 @@ AC_DEFUN([MCA_opal_common_ucx_CONFIG],[ + [common_ucx_happy="yes"], + [common_ucx_happy="no"]) + +- AC_CHECK_DECLS([open_memstream], [], [], [[#include ]]) +- + AS_IF([test "$common_ucx_happy" = "yes"], + [$1], + [$2]) +-- +2.31.1 + diff --git a/SOURCES/266189935aef4fce825d0db831b4b53accc62c32.patch b/SOURCES/266189935aef4fce825d0db831b4b53accc62c32.patch new file mode 100644 index 0000000..ac960e4 --- /dev/null +++ b/SOURCES/266189935aef4fce825d0db831b4b53accc62c32.patch @@ -0,0 +1,33 @@ +From 266189935aef4fce825d0db831b4b53accc62c32 Mon Sep 17 00:00:00 2001 +From: Jeff Squyres +Date: Tue, 22 Jun 2021 22:28:37 -0400 +Subject: [PATCH] fbtl-posix: link to common_ompio + +The posix fbtl calls mca_common_ompio_progress(), which resides in +common/ompio (i.e., libmca_common_ompio.la). So add that into +mca_fbtl_posix_la_LIBADD (like we do in a few other OMPIO-based +components). Failure to do this *can* lead to the posix fbtl +component failing to load (depending on whether other OMPIO-based +components that pull in libmca_common_ompio were loaded first). + +Thanks to Honggang Li for raising the issue. + +Signed-off-by: Jeff Squyres +--- + ompi/mca/fbtl/posix/Makefile.am | 3 ++- + 1 file changed, 2 insertions(+), 1 deletion(-) + +diff --git a/ompi/mca/fbtl/posix/Makefile.am b/ompi/mca/fbtl/posix/Makefile.am +index a7b0624d3ec..1ce19cb09b7 100644 +--- a/ompi/mca/fbtl/posix/Makefile.am ++++ b/ompi/mca/fbtl/posix/Makefile.am +@@ -34,7 +34,8 @@ mcacomponentdir = $(ompilibdir) + mcacomponent_LTLIBRARIES = $(component_install) + mca_fbtl_posix_la_SOURCES = $(sources) + mca_fbtl_posix_la_LDFLAGS = -module -avoid-version +-mca_fbtl_posix_la_LIBADD = $(top_builddir)/ompi/lib@OMPI_LIBMPI_NAME@.la ++mca_fbtl_posix_la_LIBADD = $(top_builddir)/ompi/lib@OMPI_LIBMPI_NAME@.la \ ++ $(OMPI_TOP_BUILDDIR)/ompi/mca/common/ompio/libmca_common_ompio.la + + noinst_LTLIBRARIES = $(component_noinst) + libmca_fbtl_posix_la_SOURCES = $(sources) diff --git a/SPECS/openmpi.spec b/SPECS/openmpi.spec index eab1ff2..a763dcd 100644 --- a/SPECS/openmpi.spec +++ b/SPECS/openmpi.spec @@ -26,11 +26,12 @@ %endif # Run autogen - needed for some patches -%bcond_with autogen +%bcond_without autogen Name: openmpi%{?_cc_name_suffix} -Version: 4.1.2 -Release: 1%{?dist} +Epoch: 1 +Version: 4.1.1 +Release: 5%{?dist} Summary: Open Message Passing Interface License: BSD and MIT and Romio URL: http://www.open-mpi.org/ @@ -41,6 +42,8 @@ Source1: openmpi.module.in Source2: openmpi.pth.py2 Source3: openmpi.pth.py3 Source4: macros.openmpi +Patch1: 266189935aef4fce825d0db831b4b53accc62c32.patch +Patch2: 0001-Revert-ucx-check-supported-transports-and-devices-fo.patch BuildRequires: gcc-c++ BuildRequires: gcc-gfortran @@ -112,7 +115,7 @@ researchers. For more information, see http://www.open-mpi.org/ . %package devel Summary: Development files for openmpi -Requires: %{name} = %{version}-%{release}, gcc-gfortran +Requires: %{name} = %{epoch}:%{version}-%{release}, gcc-gfortran Provides: mpi-devel %if !0%{?el7} Requires: rpm-mpi-hooks @@ -127,7 +130,7 @@ Contains development headers and libraries for openmpi. %package java Summary: Java library -Requires: %{name} = %{version}-%{release} +Requires: %{name} = %{epoch}:%{version}-%{release} Requires: java-headless %description java @@ -135,7 +138,7 @@ Java library. %package java-devel Summary: Java development files for openmpi -Requires: %{name}-java = %{version}-%{release} +Requires: %{name}-java = %{epoch}:%{version}-%{release} Requires: java-devel %description java-devel @@ -149,7 +152,7 @@ Contains development wrapper for compiling Java with openmpi. %package -n python2-openmpi Summary: OpenMPI support for Python 2 BuildRequires: python2-devel -Requires: %{name} = %{version}-%{release} +Requires: %{name} = %{epoch}:%{version}-%{release} Requires: python(abi) = %{python2_version} %description -n python2-openmpi @@ -158,7 +161,7 @@ OpenMPI support for Python 2. %package -n python%{python3_pkgversion}-openmpi Summary: OpenMPI support for Python 3 -Requires: %{name} = %{version}-%{release} +Requires: %{name} = %{epoch}:%{version}-%{release} Requires: python(abi) = %{python3_version} %description -n python%{python3_pkgversion}-openmpi @@ -355,9 +358,10 @@ make check %changelog -* Sat Nov 27 2021 Honggang Li -4.1.2-1 -- Update to 4.1.2 -- Resolve: rhbz#2015396 +* Thu Feb 17 2022 Honggang Li - 4.1.1-5 +- Revert v4.1.2 +- Add Epoch tag +- Resolves: rhbz#2055184 * Mon Aug 09 2021 Mohan Boddu - 4.1.1-4 - Rebuilt for IMA sigs, glibc 2.34, aarch64 flags