import SuperLU-5.2.0-7.el8
This commit is contained in:
CentOS Sources
Stepan Oksanichenko
commit
c1878c6b5e
1
.SuperLU.metadata
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1
.SuperLU.metadata
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@ -0,0 +1 @@
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281576edaa24f9fde5f35e28a99bff4d9703dd19 SOURCES/superlu_5.2.0.tar.gz
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1
.gitignore
vendored
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1
.gitignore
vendored
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SOURCES/superlu_5.2.0.tar.gz
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12
SOURCES/superlu-5x-add-fpic.patch
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12
SOURCES/superlu-5x-add-fpic.patch
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@ -0,0 +1,12 @@
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--- SuperLU_5.1.1/MAKE_INC/make.linux.orig 2016-03-26 08:43:03.038994570 -0400
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+++ SuperLU_5.1.1/MAKE_INC/make.linux 2016-03-26 08:44:09.141092611 -0400
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@@ -46,7 +46,8 @@
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RANLIB = ranlib
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CC = gcc
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-CFLAGS = -O3 -g
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+FPIC = -fPIC
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+CFLAGS = -O3 $(FPIC)
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NOOPTS =
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FORTRAN = gfortran #g77
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FFLAGS = -O2 -g -fopenmp
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39
SOURCES/superlu-5x-build-shared-lib3.patch
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39
SOURCES/superlu-5x-build-shared-lib3.patch
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@ -0,0 +1,39 @@
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--- SuperLU_5.1.1/SRC/Makefile.orig 2016-03-26 08:47:18.885503561 -0400
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+++ SuperLU_5.1.1/SRC/Makefile 2016-03-26 08:52:10.512497969 -0400
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@@ -98,7 +98,7 @@
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ilu_zcolumn_dfs.o ilu_zpanel_dfs.o ilu_zcopy_to_ucol.o \
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ilu_zpivotL.o zdiagonal.o zlacon2.o dzsum1.o izmax1.o
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-all: single double complex complex16
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+all: sharedlib
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single: $(SLUSRC) $(ALLAUX) $(SCAUX)
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$(ARCH) $(ARCHFLAGS) $(SUPERLULIB) $(SLUSRC) $(ALLAUX) $(SCAUX)
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@@ -116,17 +116,23 @@
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$(ARCH) $(ARCHFLAGS) $(SUPERLULIB) $(ZLUSRC) $(ALLAUX) $(DZLAUX)
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$(RANLIB) $(SUPERLULIB)
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+sharedlib: $(ALLAUX) $(LAAUX) $(SLASRC) $(DLASRC) $(CLASRC) $(ZLASRC) $(SCLAUX) $(DZLAUX) $(SLUSRC) $(DLUSRC) $(CLUSRC) $(ZLUSRC)
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+ $(CC) $(CFLAGS) $(LIBS) -shared -Wl,-soname,libsuperlu.so.5.1 -o libsuperlu.so.5.1 \
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+ $(ALLAUX) $(LAAUX) $(SLASRC) $(DLASRC) $(CLASRC) $(ZLASRC) $(SCLAUX) \
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+ $(DZLAUX) $(SLUSRC) $(DLUSRC) $(CLUSRC) $(ZLUSRC)
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+ ln -sf libsuperlu.so.5.1 libsuperlu.so
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+
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##################################
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# Do not optimize these routines #
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##################################
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-smach.o: smach.c ; $(CC) -c $(NOOPTS) $(CDEFS) $<
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-dmach.o: dmach.c ; $(CC) -c $(NOOPTS) $(CDEFS) $<
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-superlu_timer.o: superlu_timer.c ; $(CC) -c $(NOOPTS) $<
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+slamch.o: slamch.c ; $(CC) $(FPIC) $(LIBS) -c $(NOOPTS) $(CDEFS) $<
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+dlamch.o: dlamch.c ; $(CC) $(FPIC) $(LIBS) -c $(NOOPTS) $(CDEFS) $<
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+superlu_timer.o: superlu_timer.c ; $(CC) $(FPIC) $(LIBS) -c $(NOOPTS) $<
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##################################
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.c.o:
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- $(CC) $(CFLAGS) $(CDEFS) $(BLASDEF) -c $< $(VERBOSE)
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+ $(CC) $(CFLAGS) $(CDEFS) $(BLASDEF) $(LIBS) -c $< $(VERBOSE)
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.f.o:
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$(FORTRAN) $(FFLAGS) -c $<
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50
SOURCES/superlu-5x-fix-testsuite.patch
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50
SOURCES/superlu-5x-fix-testsuite.patch
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@ -0,0 +1,50 @@
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--- SuperLU_5.1.1/TESTING/Makefile.orig 2016-03-26 08:56:10.347188385 -0400
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+++ SuperLU_5.1.1/TESTING/Makefile 2016-03-26 08:58:39.763126530 -0400
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@@ -52,9 +52,9 @@
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single: ./stest stest.out
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-./stest: $(SLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
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+./stest: $(SLINTST) $(ALINTST) $(TMGLIB)
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$(LOADER) $(LOADOPTS) $(SLINTST) $(ALINTST) \
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- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
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+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
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stest.out: stest stest.csh
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@echo Testing SINGLE PRECISION linear equation routines
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@@ -62,9 +62,9 @@
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double: ./dtest dtest.out
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-./dtest: $(DLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
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+./dtest: $(DLINTST) $(ALINTST) $(TMGLIB)
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$(LOADER) $(LOADOPTS) $(DLINTST) $(ALINTST) \
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- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
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+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
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dtest.out: dtest dtest.csh
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@echo Testing DOUBLE PRECISION linear equation routines
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@@ -72,9 +72,9 @@
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complex: ./ctest ctest.out
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-./ctest: $(CLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
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+./ctest: $(CLINTST) $(ALINTST) $(TMGLIB)
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$(LOADER) $(LOADOPTS) $(CLINTST) $(ALINTST) \
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- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
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+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
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ctest.out: ctest ctest.csh
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@echo Testing SINGLE COMPLEX linear equation routines
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@@ -82,9 +82,9 @@
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complex16: ./ztest ztest.out
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-./ztest: $(ZLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
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+./ztest: $(ZLINTST) $(ALINTST) $(TMGLIB)
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$(LOADER) $(LOADOPTS) $(ZLINTST) $(ALINTST) \
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- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
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+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
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ztest.out: ztest ztest.csh
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@echo Testing DOUBLE COMPLEX linear equation routines
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25
SOURCES/superlu-removemc64.patch
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25
SOURCES/superlu-removemc64.patch
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Description: Provide stubs for the two functions whose implementation is nonfree
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Author: Sébastien Villemot <sebastien@debian.org>
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Forwarded: not-needed
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Last-Update: 2013-11-27
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---
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This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
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--- /dev/null
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+++ b/SRC/mc64ad.c
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@@ -0,0 +1,16 @@
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+#include <stdio.h>
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+#include <stdlib.h>
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+
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+void mc64id_(int *a)
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|
+{
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+ fprintf(stderr, "SuperLU: MC64 functionality not available (it uses non-free code). Aborting.\n");
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+ abort();
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+}
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+
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+void mc64ad_(int *a, int *b, int *c, int d[], int e[], double f[],
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+ int *g, int h[], int *i, int j[], int *k, double l[],
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+ int m[], int n[])
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+{
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+ fprintf(stderr, "SuperLU: MC64 functionality not available (it uses non-free code). Aborting.\n");
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+ abort();
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+}
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209
SPECS/SuperLU.spec
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209
SPECS/SuperLU.spec
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%global genname superlu
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%global libver 5.1
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## The RPM macro for the linker flags does not exist on EPEL
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%if 0%{?rhel} < 7
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%{!?__global_ldflags: %global __global_ldflags -Wl,-z,relro}
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%endif
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Name: SuperLU
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Version: 5.2.0
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Release: 7%{?dist}
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Summary: Subroutines to solve sparse linear systems
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%{?el5:Group: System/Libraries}
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License: BSD and GPLV2+
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URL: http://crd-legacy.lbl.gov/~xiaoye/SuperLU/
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||||||
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Source0: http://crd-legacy.lbl.gov/~xiaoye/SuperLU/%{genname}_%{version}.tar.gz
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|
# Build with -fPIC
|
||||||
|
Patch0: %{genname}-5x-add-fpic.patch
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||||||
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# Build shared library
|
||||||
|
Patch1: %{genname}-5x-build-shared-lib3.patch
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||||||
|
# Fixes testsuite
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||||||
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Patch3: %{genname}-5x-fix-testsuite.patch
|
||||||
|
# remove non-free mc64 functionality
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||||||
|
# patch obtained from the debian package
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|
Patch4: %{genname}-removemc64.patch
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||||||
|
|
||||||
|
%{?el5:BuildRoot: %(mktemp -ud %{_tmppath}/%{name}-%{version}-%{release}-XXXXXX)}
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||||||
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BuildRequires: atlas-devel
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BuildRequires: csh
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||||||
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%description
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|
SuperLU contains a set of subroutines to solve a sparse linear system
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A*X=B. It uses Gaussian elimination with partial pivoting (GEPP).
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|
The columns of A may be preordered before factorization; the
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|
preordering for sparsity is completely separate from the factorization.
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||||||
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|
||||||
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%package devel
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||||||
|
Summary: Header files and libraries for SuperLU development
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||||||
|
%{?el5:Group: Development/Libraries}
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||||||
|
Requires: %{name}%{?_isa} = %{version}-%{release}
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||||||
|
%{?el5:Requires: pkgconfig}
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||||||
|
|
||||||
|
%description devel
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||||||
|
The %{name}-devel package contains the header files
|
||||||
|
and libraries for use with %{name} package.
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||||||
|
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||||||
|
%package doc
|
||||||
|
Summary: Documentation and Examples for SuperLU
|
||||||
|
Requires: %{name}%{?_isa} = %{version}-%{release}
|
||||||
|
|
||||||
|
%description doc
|
||||||
|
The %{name}-doc package contains all the help documentation along with C
|
||||||
|
and FORTRAN examples.
|
||||||
|
|
||||||
|
%prep
|
||||||
|
%setup -q -n %{name}_%{version}
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||||||
|
%patch0 -p1
|
||||||
|
%patch1 -p1
|
||||||
|
%patch3 -p1
|
||||||
|
%patch4
|
||||||
|
|
||||||
|
rm -fr SRC/mc64ad.f.bak
|
||||||
|
find . -type f | sed -e "/TESTING/d" | xargs chmod a-x
|
||||||
|
# Remove the shippped executables from EXAMPLE
|
||||||
|
find EXAMPLE -type f | while read file
|
||||||
|
do
|
||||||
|
[ "$(file $file | awk '{print $2}')" = ELF ] && rm $file || :
|
||||||
|
done
|
||||||
|
cp -p MAKE_INC/make.linux make.inc
|
||||||
|
sed -i -e "s|-O3|$RPM_OPT_FLAGS|" \
|
||||||
|
-e "s|\$(SUPERLULIB) ||" \
|
||||||
|
-e "s|\$(HOME)/Dropbox/Codes/%{name}/%{name}|%{_builddir}/%{name}_%{version}|" \
|
||||||
|
-e 's!lib/libsuperlu_5.1.a$!SRC/libsuperlu.so!' \
|
||||||
|
-e 's!-shared!& %{__global_ldflags}!' \
|
||||||
|
%if 0%{?rhel} && 0%{?rhel} < 7
|
||||||
|
-e "s|-L/usr/lib -lblas|-L%{_libdir}/atlas -lf77blas|" \
|
||||||
|
%else
|
||||||
|
-e "s|-L/usr/lib -lblas|-L%{_libdir}/atlas -lsatlas|" \
|
||||||
|
%endif
|
||||||
|
make.inc
|
||||||
|
|
||||||
|
%build
|
||||||
|
make %{?_smp_mflags} superlulib
|
||||||
|
make -C TESTING
|
||||||
|
|
||||||
|
%install
|
||||||
|
%{?el5:rm -rf %{buildroot}}
|
||||||
|
mkdir -p %{buildroot}%{_libdir}
|
||||||
|
mkdir -p %{buildroot}%{_includedir}/%{name}
|
||||||
|
install -p SRC/libsuperlu.so.%{libver} %{buildroot}%{_libdir}
|
||||||
|
install -p SRC/*.h %{buildroot}%{_includedir}/%{name}
|
||||||
|
chmod -x %{buildroot}%{_includedir}/%{name}/*.h
|
||||||
|
cp -Pp SRC/libsuperlu.so %{buildroot}%{_libdir}
|
||||||
|
|
||||||
|
%check
|
||||||
|
pushd TESTING
|
||||||
|
for _test in c d s z
|
||||||
|
do
|
||||||
|
chmod +x ${_test}test.csh
|
||||||
|
./${_test}test.csh
|
||||||
|
done
|
||||||
|
popd
|
||||||
|
|
||||||
|
%{?el5:%clean}
|
||||||
|
%{?el5:rm -rf %{buildroot}}
|
||||||
|
|
||||||
|
%ldconfig_scriptlets
|
||||||
|
|
||||||
|
%files
|
||||||
|
%doc README
|
||||||
|
%license License.txt
|
||||||
|
%{_libdir}/libsuperlu.so.%{libver}
|
||||||
|
|
||||||
|
%files devel
|
||||||
|
%{_includedir}/%{name}/
|
||||||
|
%{_libdir}/libsuperlu.so
|
||||||
|
|
||||||
|
%files doc
|
||||||
|
%doc DOC EXAMPLE FORTRAN
|
||||||
|
|
||||||
|
%changelog
|
||||||
|
* Thu Feb 15 2018 Antonio Trande <sagitterATfedoraproject.org> - 5.2.0-7
|
||||||
|
- Use %%ldconfig_scriptlets
|
||||||
|
|
||||||
|
* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 5.2.0-6
|
||||||
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
|
||||||
|
|
||||||
|
* Sat Oct 21 2017 Mukundan Ragavan <nonamedotc@fedoraproject.org> - 5.2.0-5
|
||||||
|
- Fix lib linking in EPEL (added conditionals; Thanks Antonio Trande))
|
||||||
|
- Use license macro
|
||||||
|
|
||||||
|
* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 5.2.0-4
|
||||||
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
|
||||||
|
|
||||||
|
* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 5.2.0-3
|
||||||
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
|
||||||
|
|
||||||
|
* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 5.2.0-2
|
||||||
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
|
||||||
|
|
||||||
|
* Thu Apr 14 2016 Mukundan Ragavan <nonamedotc@fedoraproject.org> - 5.2.0-1
|
||||||
|
- Update to 5.2.0
|
||||||
|
- spec file cleanup
|
||||||
|
|
||||||
|
* Mon Mar 28 2016 Mukundan Ragavan <nonamedotc@fedoraproject.org> - 5.1.1-2
|
||||||
|
- Added -doc subpackage
|
||||||
|
- Added GPLv2 in the license field
|
||||||
|
|
||||||
|
* Mon Mar 21 2016 Mukundan Ragavan <nonamedotc@fedoraproject.org> - 5.1.1-1
|
||||||
|
- Update to 5.1.1
|
||||||
|
- Remove format security patch - not needed anymore
|
||||||
|
- Edit patches to be version specific
|
||||||
|
- Renamed patch4 to be consistent with others
|
||||||
|
- Minor spec file housekeeping
|
||||||
|
|
||||||
|
* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 4.3-14
|
||||||
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
|
||||||
|
|
||||||
|
* Tue Jun 16 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 4.3-13
|
||||||
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
|
||||||
|
|
||||||
|
* Sun Jan 25 2015 Mukundan Ragavan <nonamedotc@fedoraproject.org> - 4.3-12
|
||||||
|
- Fix spec file errors and remove backup files
|
||||||
|
- fixes 1084707
|
||||||
|
|
||||||
|
* Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 4.3-11
|
||||||
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
|
||||||
|
|
||||||
|
* Sun Jul 13 2014 Mukundan Ragavan <nonamedotc@gmail.com> - 4.3-10
|
||||||
|
- Removed non-free files, fixes bz#1114264
|
||||||
|
|
||||||
|
* Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 4.3-9
|
||||||
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
|
||||||
|
|
||||||
|
* Mon Jan 06 2014 Björn Esser <bjoern.esser@gmail.com> - 4.3-8
|
||||||
|
- fixed FTBFS if "-Werror=format-security" flag is used (#1037343)
|
||||||
|
- devel-pkg must Requires: %%{name}%%{?_isa}
|
||||||
|
- apply proper LDFLAGS
|
||||||
|
- added needed bits for el5
|
||||||
|
- reenable testsuite using Patch3
|
||||||
|
|
||||||
|
* Fri Oct 4 2013 Orion Poplawski <orion@cora.nwra.com> - 4.3-7
|
||||||
|
- Rebuild for atlas 3.10
|
||||||
|
- Handle UnversionedDocDirs change
|
||||||
|
|
||||||
|
* Fri Aug 02 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 4.3-6
|
||||||
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
|
||||||
|
|
||||||
|
* Mon Mar 25 2013 Shakthi Kannan <shakthimaan [AT] fedoraproject dot org> 4.3-5
|
||||||
|
- Ship SuperLU examples
|
||||||
|
|
||||||
|
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 4.3-4
|
||||||
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
|
||||||
|
|
||||||
|
* Sat Aug 25 2012 Shakthi Kannan <shakthimaan [AT] fedoraproject dot org> 4.3-3
|
||||||
|
- Use README in main package and DOC in devel package
|
||||||
|
- chmod a-x on SRC/qselect.c
|
||||||
|
- Remove -latlas linking in prep section
|
||||||
|
- Added Patch comments
|
||||||
|
- Use name RPM macro in patch name
|
||||||
|
|
||||||
|
* Wed Feb 01 2012 Shakthi Kannan <shakthimaan [AT] fedoraproject dot org> 4.3-2
|
||||||
|
- Use atlas library instead of blas.
|
||||||
|
- Use RPM_OPT_FLAGS and LIBS when building sources.
|
||||||
|
- Use macros as required for name and version.
|
||||||
|
|
||||||
|
* Fri Jan 06 2012 Shakthi Kannan <shakthimaan [AT] fedoraproject dot org> 4.3-1
|
||||||
|
- First release.
|
||||||
Loading…
Reference in New Issue
Block a user