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import SuperLU-5.2.0-7.el8

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CentOS Sources 2021-09-13 16:28:50 +00:00 committed by Stepan Oksanichenko
commit c1878c6b5e
7 changed files with 337 additions and 0 deletions
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1
.SuperLU.metadata Normal file
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281576edaa24f9fde5f35e28a99bff4d9703dd19 SOURCES/superlu_5.2.0.tar.gz

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.gitignore vendored Normal file
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SOURCES/superlu_5.2.0.tar.gz

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SOURCES/superlu-5x-add-fpic.patch Normal file
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--- SuperLU_5.1.1/MAKE_INC/make.linux.orig 2016-03-26 08:43:03.038994570 -0400
+++ SuperLU_5.1.1/MAKE_INC/make.linux 2016-03-26 08:44:09.141092611 -0400
@@ -46,7 +46,8 @@
RANLIB = ranlib
CC = gcc
-CFLAGS = -O3 -g
+FPIC = -fPIC
+CFLAGS = -O3 $(FPIC)
NOOPTS =
FORTRAN = gfortran #g77
FFLAGS = -O2 -g -fopenmp

39
SOURCES/superlu-5x-build-shared-lib3.patch Normal file
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@ -0,0 +1,39 @@
--- SuperLU_5.1.1/SRC/Makefile.orig 2016-03-26 08:47:18.885503561 -0400
+++ SuperLU_5.1.1/SRC/Makefile 2016-03-26 08:52:10.512497969 -0400
@@ -98,7 +98,7 @@
ilu_zcolumn_dfs.o ilu_zpanel_dfs.o ilu_zcopy_to_ucol.o \
ilu_zpivotL.o zdiagonal.o zlacon2.o dzsum1.o izmax1.o
-all: single double complex complex16
+all: sharedlib
single: $(SLUSRC) $(ALLAUX) $(SCAUX)
$(ARCH) $(ARCHFLAGS) $(SUPERLULIB) $(SLUSRC) $(ALLAUX) $(SCAUX)
@@ -116,17 +116,23 @@
$(ARCH) $(ARCHFLAGS) $(SUPERLULIB) $(ZLUSRC) $(ALLAUX) $(DZLAUX)
$(RANLIB) $(SUPERLULIB)
+sharedlib: $(ALLAUX) $(LAAUX) $(SLASRC) $(DLASRC) $(CLASRC) $(ZLASRC) $(SCLAUX) $(DZLAUX) $(SLUSRC) $(DLUSRC) $(CLUSRC) $(ZLUSRC)
+ $(CC) $(CFLAGS) $(LIBS) -shared -Wl,-soname,libsuperlu.so.5.1 -o libsuperlu.so.5.1 \
+ $(ALLAUX) $(LAAUX) $(SLASRC) $(DLASRC) $(CLASRC) $(ZLASRC) $(SCLAUX) \
+ $(DZLAUX) $(SLUSRC) $(DLUSRC) $(CLUSRC) $(ZLUSRC)
+ ln -sf libsuperlu.so.5.1 libsuperlu.so
+
##################################
# Do not optimize these routines #
##################################
-smach.o: smach.c ; $(CC) -c $(NOOPTS) $(CDEFS) $<
-dmach.o: dmach.c ; $(CC) -c $(NOOPTS) $(CDEFS) $<
-superlu_timer.o: superlu_timer.c ; $(CC) -c $(NOOPTS) $<
+slamch.o: slamch.c ; $(CC) $(FPIC) $(LIBS) -c $(NOOPTS) $(CDEFS) $<
+dlamch.o: dlamch.c ; $(CC) $(FPIC) $(LIBS) -c $(NOOPTS) $(CDEFS) $<
+superlu_timer.o: superlu_timer.c ; $(CC) $(FPIC) $(LIBS) -c $(NOOPTS) $<
##################################
.c.o:
- $(CC) $(CFLAGS) $(CDEFS) $(BLASDEF) -c $< $(VERBOSE)
+ $(CC) $(CFLAGS) $(CDEFS) $(BLASDEF) $(LIBS) -c $< $(VERBOSE)
.f.o:
$(FORTRAN) $(FFLAGS) -c $<

50
SOURCES/superlu-5x-fix-testsuite.patch Normal file
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--- SuperLU_5.1.1/TESTING/Makefile.orig 2016-03-26 08:56:10.347188385 -0400
+++ SuperLU_5.1.1/TESTING/Makefile 2016-03-26 08:58:39.763126530 -0400
@@ -52,9 +52,9 @@
single: ./stest stest.out
-./stest: $(SLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
+./stest: $(SLINTST) $(ALINTST) $(TMGLIB)
$(LOADER) $(LOADOPTS) $(SLINTST) $(ALINTST) \
- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
stest.out: stest stest.csh
@echo Testing SINGLE PRECISION linear equation routines
@@ -62,9 +62,9 @@
double: ./dtest dtest.out
-./dtest: $(DLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
+./dtest: $(DLINTST) $(ALINTST) $(TMGLIB)
$(LOADER) $(LOADOPTS) $(DLINTST) $(ALINTST) \
- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
dtest.out: dtest dtest.csh
@echo Testing DOUBLE PRECISION linear equation routines
@@ -72,9 +72,9 @@
complex: ./ctest ctest.out
-./ctest: $(CLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
+./ctest: $(CLINTST) $(ALINTST) $(TMGLIB)
$(LOADER) $(LOADOPTS) $(CLINTST) $(ALINTST) \
- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
ctest.out: ctest ctest.csh
@echo Testing SINGLE COMPLEX linear equation routines
@@ -82,9 +82,9 @@
complex16: ./ztest ztest.out
-./ztest: $(ZLINTST) $(ALINTST) $(SUPERLULIB) $(TMGLIB)
+./ztest: $(ZLINTST) $(ALINTST) $(TMGLIB)
$(LOADER) $(LOADOPTS) $(ZLINTST) $(ALINTST) \
- $(TMGLIB) $(SUPERLULIB) $(BLASLIB) -lm -o $@
+ $(TMGLIB) -Wl,-rpath,../SRC $(SUPERLULIB) $(BLASLIB) -lm -o $@
ztest.out: ztest ztest.csh
@echo Testing DOUBLE COMPLEX linear equation routines

25
SOURCES/superlu-removemc64.patch Normal file
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Description: Provide stubs for the two functions whose implementation is nonfree
Author: Sébastien Villemot <sebastien@debian.org>
Forwarded: not-needed
Last-Update: 2013-11-27
---
This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
--- /dev/null
+++ b/SRC/mc64ad.c
@@ -0,0 +1,16 @@
+#include <stdio.h>
+#include <stdlib.h>
+
+void mc64id_(int *a)
+{
+ fprintf(stderr, "SuperLU: MC64 functionality not available (it uses non-free code). Aborting.\n");
+ abort();
+}
+
+void mc64ad_(int *a, int *b, int *c, int d[], int e[], double f[],
+ int *g, int h[], int *i, int j[], int *k, double l[],
+ int m[], int n[])
+{
+ fprintf(stderr, "SuperLU: MC64 functionality not available (it uses non-free code). Aborting.\n");
+ abort();
+}

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SPECS/SuperLU.spec Normal file
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%global genname superlu
%global libver 5.1
## The RPM macro for the linker flags does not exist on EPEL
%if 0%{?rhel} < 7
%{!?__global_ldflags: %global __global_ldflags -Wl,-z,relro}
%endif
Name: SuperLU
Version: 5.2.0
Release: 7%{?dist}
Summary: Subroutines to solve sparse linear systems
%{?el5:Group: System/Libraries}
License: BSD and GPLV2+
URL: http://crd-legacy.lbl.gov/~xiaoye/SuperLU/
Source0: http://crd-legacy.lbl.gov/~xiaoye/SuperLU/%{genname}_%{version}.tar.gz
# Build with -fPIC
Patch0: %{genname}-5x-add-fpic.patch
# Build shared library
Patch1: %{genname}-5x-build-shared-lib3.patch
# Fixes testsuite
Patch3: %{genname}-5x-fix-testsuite.patch
# remove non-free mc64 functionality
# patch obtained from the debian package
Patch4: %{genname}-removemc64.patch
%{?el5:BuildRoot: %(mktemp -ud %{_tmppath}/%{name}-%{version}-%{release}-XXXXXX)}
BuildRequires: atlas-devel
BuildRequires: csh
%description
SuperLU contains a set of subroutines to solve a sparse linear system
A*X=B. It uses Gaussian elimination with partial pivoting (GEPP).
The columns of A may be preordered before factorization; the
preordering for sparsity is completely separate from the factorization.
%package devel
Summary: Header files and libraries for SuperLU development
%{?el5:Group: Development/Libraries}
Requires: %{name}%{?_isa} = %{version}-%{release}
%{?el5:Requires: pkgconfig}
%description devel
The %{name}-devel package contains the header files
and libraries for use with %{name} package.
%package doc
Summary: Documentation and Examples for SuperLU
Requires: %{name}%{?_isa} = %{version}-%{release}
%description doc
The %{name}-doc package contains all the help documentation along with C
and FORTRAN examples.
%prep
%setup -q -n %{name}_%{version}
%patch0 -p1
%patch1 -p1
%patch3 -p1
%patch4
rm -fr SRC/mc64ad.f.bak
find . -type f | sed -e "/TESTING/d" | xargs chmod a-x
# Remove the shippped executables from EXAMPLE
find EXAMPLE -type f | while read file
do
[ "$(file $file | awk '{print $2}')" = ELF ] && rm $file || :
done
cp -p MAKE_INC/make.linux make.inc
sed -i -e "s|-O3|$RPM_OPT_FLAGS|" \
-e "s|\$(SUPERLULIB) ||" \
-e "s|\$(HOME)/Dropbox/Codes/%{name}/%{name}|%{_builddir}/%{name}_%{version}|" \
-e 's!lib/libsuperlu_5.1.a$!SRC/libsuperlu.so!' \
-e 's!-shared!& %{__global_ldflags}!' \
%if 0%{?rhel} && 0%{?rhel} < 7
-e "s|-L/usr/lib -lblas|-L%{_libdir}/atlas -lf77blas|" \
%else
-e "s|-L/usr/lib -lblas|-L%{_libdir}/atlas -lsatlas|" \
%endif
make.inc
%build
make %{?_smp_mflags} superlulib
make -C TESTING
%install
%{?el5:rm -rf %{buildroot}}
mkdir -p %{buildroot}%{_libdir}
mkdir -p %{buildroot}%{_includedir}/%{name}
install -p SRC/libsuperlu.so.%{libver} %{buildroot}%{_libdir}
install -p SRC/*.h %{buildroot}%{_includedir}/%{name}
chmod -x %{buildroot}%{_includedir}/%{name}/*.h
cp -Pp SRC/libsuperlu.so %{buildroot}%{_libdir}
%check
pushd TESTING
for _test in c d s z
do
chmod +x ${_test}test.csh
./${_test}test.csh
done
popd
%{?el5:%clean}
%{?el5:rm -rf %{buildroot}}
%ldconfig_scriptlets
%files
%doc README
%license License.txt
%{_libdir}/libsuperlu.so.%{libver}
%files devel
%{_includedir}/%{name}/
%{_libdir}/libsuperlu.so
%files doc
%doc DOC EXAMPLE FORTRAN
%changelog
* Thu Feb 15 2018 Antonio Trande <sagitterATfedoraproject.org> - 5.2.0-7
- Use %%ldconfig_scriptlets
* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 5.2.0-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
* Sat Oct 21 2017 Mukundan Ragavan <nonamedotc@fedoraproject.org> - 5.2.0-5
- Fix lib linking in EPEL (added conditionals; Thanks Antonio Trande))
- Use license macro
* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 5.2.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 5.2.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 5.2.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
* Thu Apr 14 2016 Mukundan Ragavan <nonamedotc@fedoraproject.org> - 5.2.0-1
- Update to 5.2.0
- spec file cleanup
* Mon Mar 28 2016 Mukundan Ragavan <nonamedotc@fedoraproject.org> - 5.1.1-2
- Added -doc subpackage
- Added GPLv2 in the license field
* Mon Mar 21 2016 Mukundan Ragavan <nonamedotc@fedoraproject.org> - 5.1.1-1
- Update to 5.1.1
- Remove format security patch - not needed anymore
- Edit patches to be version specific
- Renamed patch4 to be consistent with others
- Minor spec file housekeeping
* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 4.3-14
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
* Tue Jun 16 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 4.3-13
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
* Sun Jan 25 2015 Mukundan Ragavan <nonamedotc@fedoraproject.org> - 4.3-12
- Fix spec file errors and remove backup files
- fixes 1084707
* Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 4.3-11
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
* Sun Jul 13 2014 Mukundan Ragavan <nonamedotc@gmail.com> - 4.3-10
- Removed non-free files, fixes bz#1114264
* Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 4.3-9
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
* Mon Jan 06 2014 Björn Esser <bjoern.esser@gmail.com> - 4.3-8
- fixed FTBFS if "-Werror=format-security" flag is used (#1037343)
- devel-pkg must Requires: %%{name}%%{?_isa}
- apply proper LDFLAGS
- added needed bits for el5
- reenable testsuite using Patch3
* Fri Oct 4 2013 Orion Poplawski <orion@cora.nwra.com> - 4.3-7
- Rebuild for atlas 3.10
- Handle UnversionedDocDirs change
* Fri Aug 02 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 4.3-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
* Mon Mar 25 2013 Shakthi Kannan <shakthimaan [AT] fedoraproject dot org> 4.3-5
- Ship SuperLU examples
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 4.3-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
* Sat Aug 25 2012 Shakthi Kannan <shakthimaan [AT] fedoraproject dot org> 4.3-3
- Use README in main package and DOC in devel package
- chmod a-x on SRC/qselect.c
- Remove -latlas linking in prep section
- Added Patch comments
- Use name RPM macro in patch name
* Wed Feb 01 2012 Shakthi Kannan <shakthimaan [AT] fedoraproject dot org> 4.3-2
- Use atlas library instead of blas.
- Use RPM_OPT_FLAGS and LIBS when building sources.
- Use macros as required for name and version.
* Fri Jan 06 2012 Shakthi Kannan <shakthimaan [AT] fedoraproject dot org> 4.3-1
- First release.